moduleMatrix: Modulematrix Construction
In SeqMADE: Network Module-Based Model in the Differential Expression Analysis for RNA-Seq
Description
Usage
Arguments
Details
Author(s)
Examples
Description
A function of constructing the modulematrix for the modules was used to indicate whether genes belong to a given module or not.
Usage
1
Arguments
exprs
exprs is a data frame or matrix for two groups or conditions, with rows as variables (genes) and columns as samples
networkModule
NetworkModule is the gene sets or modules in the biological network or metabolic pathway, with the 1th column as the module names and the 2th columnn as the gene symbols constituting the module
Details
Modulematrix is a matrix, in which the indicator variables 1 or 0 represent whether a gene belong to a given module or not.
Author(s)
Mingli Lei, Jia Xu, Li-Ching Huang, Lily Wang, Jing Li
Examples
1
2
3
data(exprs)
data(networkModule)
modulematrix <- moduleMatrix(exprs,networkModule)
Example output
Loading required package: MASS
SeqMADE documentation built on May 1, 2019, 10:20 p.m.
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Description Usage Arguments Details Author(s) Examples
Description
A function of constructing the modulematrix for the modules was used to indicate whether genes belong to a given module or not.
Usage
1 |
Arguments
exprs |
exprs is a data frame or matrix for two groups or conditions, with rows as variables (genes) and columns as samples |
networkModule |
NetworkModule is the gene sets or modules in the biological network or metabolic pathway, with the 1th column as the module names and the 2th columnn as the gene symbols constituting the module |
Details
Modulematrix is a matrix, in which the indicator variables 1 or 0 represent whether a gene belong to a given module or not.
Author(s)
Mingli Lei, Jia Xu, Li-Ching Huang, Lily Wang, Jing Li
Examples
1 2 3 | data(exprs)
data(networkModule)
modulematrix <- moduleMatrix(exprs,networkModule)
|
Example output
Loading required package: MASS
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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