SequenceAnalysis.GC: SequenceAnalysis.GC

Description Usage Arguments Details Value Author(s) Examples

View source: R/GC.R

Description

GC content : percentage of nucleotide g and c

Usage

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SequenceAnalysis.GC(Nucleotide_Sequence = NULL, UniprotKB = NULL,
  CDS = FALSE)

Arguments

Nucleotide_Sequence

Nucleotide Sequence

UniprotKB

UniProt ID of desired sequence

CDS

if TRUE GC content of CDS Region will be calculated

Details

Calculate GC content for input sequence or by passing UniProt ID it will catch the sequence online from UniProt database and then calculate GC content for it.

Value

GC content

Author(s)

Babak Khorsand

Examples

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SequenceAnalysis.GC("actagtcacgatcag")
SequenceAnalysis.GC(UniprotKB="O15131")
SequenceAnalysis.GC(UniprotKB="O15131",CDS=TRUE)

SequenceAnalysis documentation built on May 30, 2017, 8 a.m.