SequenceAnalysis.GC: SequenceAnalysis.GC

In SequenceAnalysis: Sequence Analysis

Description

GC content : percentage of nucleotide g and c

Usage

SequenceAnalysis.GC(Nucleotide_Sequence = NULL, UniprotKB = NULL,
  CDS = FALSE)

Arguments

Nucleotide_Sequence	Nucleotide Sequence
UniprotKB	UniProt ID of desired sequence
CDS	if TRUE GC content of CDS Region will be calculated

Details

Calculate GC content for input sequence or by passing UniProt ID it will catch the sequence online from UniProt database and then calculate GC content for it.

Value

GC content

Author(s)

Babak Khorsand

Examples

SequenceAnalysis.GC("actagtcacgatcag")
SequenceAnalysis.GC(UniprotKB="O15131")
SequenceAnalysis.GC(UniprotKB="O15131",CDS=TRUE)

SequenceAnalysis documentation built on May 30, 2017, 8 a.m.