generate_design_matrix: Generate Design Matrix
In ShiVa: Detection of Evolutionary Shifts in Both Optimal Value and Variance
generate_design_matrix R Documentation
Generate Design Matrix
Description
Constructs a design matrix for a given phylogenetic tree, used in Ornstein-Uhlenbeck modeling.
Usage
generate_design_matrix(tree, type = "simpX", alpha = 0)
Arguments
tree
A phylogenetic tree of class phylo.
type
A character string specifying the type of design matrix to generate. Options are "simpX" or "orgX".
alpha
The selection strength parameter (only used when type = "orgX").
Value
A design matrix X, where each row corresponds to a tip and each column to an edge in the tree.
ShiVa documentation built on Aug. 22, 2025, 9:14 a.m.
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| generate_design_matrix | R Documentation |
Generate Design Matrix
Description
Constructs a design matrix for a given phylogenetic tree, used in Ornstein-Uhlenbeck modeling.
Usage
generate_design_matrix(tree, type = "simpX", alpha = 0)
Arguments
tree |
A phylogenetic tree of class |
type |
A character string specifying the type of design matrix to generate. Options are |
alpha |
The selection strength parameter (only used when |
Value
A design matrix X, where each row corresponds to a tip and each column to an edge in the tree.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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