plot.ShiftModel: Plot Method for ShiftModel Objects

In ShiVa: Detection of Evolutionary Shifts in Both Optimal Value and Variance

Plot Method for ShiftModel Objects

Description

Plots a phylogenetic tree with trait values at the tips and highlights branches with detected shifts in optimal value (mean) and variance.

Usage

## S3 method for class 'ShiftModel'
plot(x, title = "", ...)

Arguments

x	An object of class ShiftModel, typically returned by fit_OU_mean_var() or ShiVa().
title	A character string specifying the plot title.
...	Additional arguments passed to plot.phylo().

Value

No return value. This function is called for its side effect: a plotted tree.

ShiVa documentation built on Aug. 22, 2025, 9:14 a.m.