allele.freq | Frequencies of SNPs. |
build.cor.phe | Build correlated phenotypes |
build.sd.matrix | build a matrix with standard deviation |
calc.gene.var | Genetic Variance |
calc.herit | Calculate heritability |
check.snp.par | Check the number of the SNPs involved in epistasis and main... |
count.allele | Count allele frequencies |
epistasis.pars | Parameter settings of epistatic effects. |
gene.coefficients | Coefficients of genetic effects. |
gene.effect | Get genetic effect |
genepars | Parameter settings for simulation. |
genetic.scale | Genetic scales of epistatic model |
get.freq | Calculate the gene(allele) frequency |
get.gene.coef | Get the coefficients of genetic effect |
get.noise.var | Suggestion noise |
list2frame | Convert list to data.frame |
maineff.pars | Parameter settings of main effects (additive effect and... |
pars.writer | Write current parameters to file |
phe.writer | Write phenotypes |
read.geno | Read genotype data based on the file format |
read.simu.pars | Read parameters |
regextract | Extract (sub)strings matching regex pattern |
sim.phe | Simulation for phenotypes (SimPhe main process) |
specify.pars | Get the parameters of main/epistatic effects per phenotype |
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