genepars: Parameter settings for simulation.
In SimPhe: Tools to Simulate Phenotype(s) with Epistatic Interaction
Description
A dataset containing the parameters for a simulation.
genepars.
Usage
1
Format
A list with 7 elements:
- P1mean
A data frame with 1 row and 1 variable:
- mean
β_{0}: coefficient parameter of "basic" genetic effects in G_{ij}=β_{0}+∑_{t=1}^{8}β_{G_{w_{t}}}w_{tij}.
- P1main
A data frame with 6 rows and 3 variables:
- SNP
SNP name
- additive
coefficient of additive effect
- dominance
coefficient of dominance effect
- P1epistasis
A data frame with 3 rows and 6 variables:
- SNPA
first SNP
- SNPB
second SNP
- additive_additive
coefficient for additive-additive interaction
- additive_dominance
coefficient for additive-dominance interaction
- dominance_additive
coefficient for dominance-additive interaction
- dominance_dominance
coefficient for dominance-dominance interaction
- P1heritability
A data frame with 1 row and 1 variable:
- heritability
expected heritability
- P2mean
A data frame with 1 row and 1 variable:
- mean
mean of genetic effect
- P2main
A data frame with 6 rows and 3 variables:
- SNP
SNP name
- additive
coefficient of additive effect
- dominance
coefficient of dominance effect
- P2epistasis
A data frame with 3 rows and 6 variables:
- SNPA
first SNP
- SNPB
second SNP
- additive_additive
coefficient for additive-additive interaction
- additive_dominance
coefficient for additive-dominance interaction
- dominance_additive
coefficient for dominance-additive interaction
- dominance_dominance
coefficient for dominance-dominance interaction
SimPhe documentation built on May 1, 2019, 9:10 p.m.
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Description
A dataset containing the parameters for a simulation. genepars.
Usage
1 |
Format
A list with 7 elements:
- P1mean
A data frame with 1 row and 1 variable:
- mean
β_{0}: coefficient parameter of "basic" genetic effects in G_{ij}=β_{0}+∑_{t=1}^{8}β_{G_{w_{t}}}w_{tij}.
- P1main
A data frame with 6 rows and 3 variables:
- SNP
SNP name
- additive
coefficient of additive effect
- dominance
coefficient of dominance effect
- P1epistasis
A data frame with 3 rows and 6 variables:
- SNPA
first SNP
- SNPB
second SNP
- additive_additive
coefficient for additive-additive interaction
- additive_dominance
coefficient for additive-dominance interaction
- dominance_additive
coefficient for dominance-additive interaction
- dominance_dominance
coefficient for dominance-dominance interaction
- P1heritability
A data frame with 1 row and 1 variable:
- heritability
expected heritability
- P2mean
A data frame with 1 row and 1 variable:
- mean
mean of genetic effect
- P2main
A data frame with 6 rows and 3 variables:
- SNP
SNP name
- additive
coefficient of additive effect
- dominance
coefficient of dominance effect
- P2epistasis
A data frame with 3 rows and 6 variables:
- SNPA
first SNP
- SNPB
second SNP
- additive_additive
coefficient for additive-additive interaction
- additive_dominance
coefficient for additive-dominance interaction
- dominance_additive
coefficient for dominance-additive interaction
- dominance_dominance
coefficient for dominance-dominance interaction
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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