Nothing
parseHeader()
correctly parses header information of an ADATCode
header
Output
$Header.Meta
$Header.Meta$HEADER
$Header.Meta$HEADER$AdatId
[1] "GID-1234-56-7890-abcdef"
attr(,"raw_key")
[1] "!AdatId"
$Header.Meta$HEADER$Version
[1] "1.2"
attr(,"raw_key")
[1] "!Version"
$Header.Meta$HEADER$AssayType
[1] "PharmaServices"
attr(,"raw_key")
[1] "!AssayType"
$Header.Meta$HEADER$AssayVersion
[1] "V4"
attr(,"raw_key")
[1] "!AssayVersion"
$Header.Meta$HEADER$AssayRobot
[1] "Fluent 1 L-307"
attr(,"raw_key")
[1] "!AssayRobot"
$Header.Meta$HEADER$Legal
[1] "Experiment details and data have been processed to protect Personally Identifiable Information (PII) and comply with existing privacy laws."
attr(,"raw_key")
[1] "!Legal"
$Header.Meta$HEADER$CreatedBy
[1] "PharmaServices"
attr(,"raw_key")
[1] "!CreatedBy"
$Header.Meta$HEADER$CreatedDate
[1] "2020-07-25"
attr(,"raw_key")
[1] "!CreatedDate"
$Header.Meta$HEADER$EnteredBy
[1] "Technician2"
attr(,"raw_key")
[1] "!EnteredBy"
$Header.Meta$HEADER$GeneratedBy
[1] "Px (Build: : ), Canopy_0.1.1"
attr(,"raw_key")
[1] "!GeneratedBy"
$Header.Meta$HEADER$StudyMatrix
[1] "EDTA Plasma"
attr(,"raw_key")
[1] "!StudyMatrix"
$Header.Meta$HEADER$Title
[1] "Example Adat Set001, Example Adat Set002"
attr(,"raw_key")
[1] "!Title"
$Header.Meta$COL_DATA
$Header.Meta$COL_DATA$Name
[1] "SeqId"
[2] "SeqIdVersion"
[3] "SomaId"
[4] "TargetFullName"
[5] "Target"
[6] "UniProt"
[7] "EntrezGeneID"
[8] "EntrezGeneSymbol"
[9] "Organism"
[10] "Units"
[11] "Type"
[12] "Dilution"
[13] "PlateScale_Reference"
[14] "CalReference"
[15] "Cal_Example_Adat_Set001"
[16] "ColCheck"
[17] "CalQcRatio_Example_Adat_Set001_170255"
[18] "QcReference_170255"
[19] "Cal_Example_Adat_Set002"
[20] "CalQcRatio_Example_Adat_Set002_170255"
attr(,"raw_key")
[1] "!Name"
$Header.Meta$COL_DATA$Type
[1] "String" "String" "String" "String" "String" "String" "String" "String"
[9] "String" "String" "String" "String" "String" "String" "String" "String"
[17] "String" "String" "String" "String"
attr(,"raw_key")
[1] "!Type"
$Header.Meta$ROW_DATA
$Header.Meta$ROW_DATA$Name
[1] "PlateId" "PlateRunDate" "ScannerID"
[4] "PlatePosition" "SlideId" "Subarray"
[7] "SampleId" "SampleType" "PercentDilution"
[10] "SampleMatrix" "Barcode" "Barcode2d"
[13] "SampleName" "SampleNotes" "AliquotingNotes"
[16] "SampleDescription" "AssayNotes" "TimePoint"
[19] "ExtIdentifier" "SsfExtId" "SampleGroup"
[22] "SiteId" "TubeUniqueID" "CLI"
[25] "HybControlNormScale" "RowCheck" "NormScale_20"
[28] "NormScale_0_005" "NormScale_0_5" "ANMLFractionUsed_20"
[31] "ANMLFractionUsed_0_005" "ANMLFractionUsed_0_5" "Age"
[34] "Sex"
attr(,"raw_key")
[1] "!Name"
$Header.Meta$ROW_DATA$Type
[1] "character" "character" "character" "character" "double" "double"
[7] "character" "character" "integer" "character" "logical" "character"
[13] "logical" "logical" "logical" "logical" "logical" "logical"
[19] "logical" "logical" "logical" "logical" "logical" "logical"
[25] "double" "character" "double" "double" "double" "double"
[31] "double" "double" "integer" "character"
attr(,"raw_key")
[1] "!Type"
$Header.Meta$TABLE_BEGIN
[1] "single_sample.adat"
$file_specs
$file_specs$empty_adat
[1] FALSE
$file_specs$table_begin
[1] 20
$file_specs$col_meta_start
[1] 21
$file_specs$col_meta_shift
[1] 35
$file_specs$data_begin
[1] 41
$file_specs$old_adat
[1] FALSE
$row_meta
[1] "PlateId" "PlateRunDate" "ScannerID"
[4] "PlatePosition" "SlideId" "Subarray"
[7] "SampleId" "SampleType" "PercentDilution"
[10] "SampleMatrix" "Barcode" "Barcode2d"
[13] "SampleName" "SampleNotes" "AliquotingNotes"
[16] "SampleDescription" "AssayNotes" "TimePoint"
[19] "ExtIdentifier" "SsfExtId" "SampleGroup"
[22] "SiteId" "TubeUniqueID" "CLI"
[25] "HybControlNormScale" "RowCheck" "NormScale_20"
[28] "NormScale_0_005" "NormScale_0_5" "ANMLFractionUsed_20"
[31] "ANMLFractionUsed_0_005" "ANMLFractionUsed_0_5" "Age"
[34] "Sex"
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