tests/testthat/_snaps/utils-read-adat.md

In SomaDataIO: Input/Output 'SomaScan' Data

checkHeader() prints expected output

Code
  checkHeader(header, verbose = TRUE)
Message
  v Header passed checks and traps

.verbosity()` prints expected output

Code
  .verbosity(adat, header)
Output
  == Parsing Diagnostics =========================================================
Message
  v ADAT version              > 1.2
  v Header skip               > 41
  v Table begin               > 20
  v Col.Meta start            > 21
  v Col.Meta shift            > 35
  v Is old ADAT               > FALSE
  v no. clinical variables    > 34
  v no. RFU variables         > 5284
  v Dim data matrix           > 1 x 5318
  v Dim Col.Meta (annot.)     > 5284 x 20
Output
  -- Head Col Meta ---------------------------------------------------------------
  # A tibble: 6 x 20
    SeqId    SeqIdVersion SomaId   TargetFullName      Target UniProt EntrezGeneID
    <chr>    <chr>        <chr>    <chr>               <chr>  <chr>   <chr>       
  1 10000-28 3            SL019233 Beta-crystallin B2  CRBB2  P43320  1415        
  2 10001-7  3            SL002564 RAF proto-oncogene~ c-Raf  P04049  5894        
  3 10003-15 3            SL019245 Zinc finger protei~ ZNF41  P51814  7592        
  4 10006-25 3            SL019228 ETS domain-contain~ ELK1   P19419  2002        
  5 10008-43 3            SL019234 Guanylyl cyclase-a~ GUC1A  P43080  2978        
  6 10011-65 3            SL019246 Inositol polyphosp~ OCRL   Q01968  4952        
  # i 13 more variables: EntrezGeneSymbol <chr>, Organism <chr>, Units <chr>,
  #   Type <chr>, Dilution <chr>, PlateScale_Reference <chr>, CalReference <chr>,
  #   Cal_Example_Adat_Set001 <chr>, ColCheck <chr>,
  #   CalQcRatio_Example_Adat_Set001_170255 <chr>, QcReference_170255 <chr>,
  #   Cal_Example_Adat_Set002 <chr>, CalQcRatio_Example_Adat_Set002_170255 <chr>
  -- Trailing 2 RFU features -----------------------------------------------------
  # A tibble: 1 x 2
    seq.9997.12 seq.9999.1
          <dbl>      <dbl>
  1      11983.      1741.
  ================================================================================

SomaDataIO documentation built on April 4, 2025, 2:14 a.m.