SurvRank: Rank Based Survival Modelling

Estimation of the prediction accuracy in a unified survival AUC approach. Model selection and prediction estimation based on a survival AUC. Stepwise model selection, based on several ranking approaches.

AuthorMichael Laimighofer [aut, cre, ctb]
Date of publication2015-08-26 14:22:13
MaintainerMichael Laimighofer <michael.laimighofer@helmholtz-muenchen.de>
LicenseGPL-2
Version0.1

View on CRAN

Man pages

crossvalFolds: Creating stratified cross validation folds

CVrankSurv_fct: Main function of SurvRank.

fin_surv_model_fct: Building the final survRank model

fixRank_fct: Wrapper function using f as ranking method

fsRankBoostAUC_fct: Wrapper function using additive models with component-wise...

fsRankConcAUC_fct: Wrapper function using the concordance measure as ranking...

fsRankCoxAUC_fct: Wrapper function using the univariate Cox models as ranking...

fsRankLassoAUC_fct: Wrapper function using the L1 norm (lasso) as ranking method

fsRankMonsterAUC_fct: Wrapper function using cox models with randomly selected nmax...

fsRankRfAUC_fct: Wrapper function using the random forests as ranking method

fsRankRpartAUC_fct: Wrapper function using recursive partitioning and regression...

fsRankWangAUC_fct: Wrapper function using univariate cox models for a randomly...

fsSurvRankBoost: Boost ranking function

fsSurvRankConc: Concordance ranking function

fsSurvRankCox: Cox ranking function

fsSurvRankGlmnet: L1 (lasso) ranking function

fsSurvRankRandCox: Random Cox ranking function

fsSurvRankRf: Random forest ranking function

fsSurvRankRpart: Rpart ranking function

fsSurvRankWang: Random Cox ranking function

glmnetRank: Ranks features of a previously fitted 'glmnet' object

innerAUC_fct: Calculates inner and outer survival AUCs of training and...

msSurv_fct: Function selects for the ranking function approaches

plot_CVsurv: Main function of SurvRank

risk_newdat: Main function of SurvRank.

riskscore_fct: Main function of SurvRank.

weighting_fct: Weigthing function for selected features

Functions

crossvalFolds Man page
CVrankSurv_fct Man page
fin_surv_model_fct Man page
fixRank_fct Man page
fsRankBoostAUC_fct Man page
fsRankConcAUC_fct Man page
fsRankCoxAUC_fct Man page
fsRankLassoAUC_fct Man page
fsRankMonsterAUC_fct Man page
fsRankRfAUC_fct Man page
fsRankRpartAUC_fct Man page
fsRankWangAUC_fct Man page
fsSurvRankBoost Man page
fsSurvRankConc Man page
fsSurvRankCox Man page
fsSurvRankGlmnet Man page
fsSurvRankRandCox Man page
fsSurvRankRf Man page
fsSurvRankRpart Man page
fsSurvRankWang Man page
glmnetRank Man page
innerAUC_fct Man page
msSurv_fct Man page
plot_CVsurv Man page
risk_newdat Man page
riskscore_fct Man page
weighting_fct Man page

Files

SurvRank
SurvRank/inst
SurvRank/inst/doc
SurvRank/inst/doc/SurvRank.html
SurvRank/inst/doc/SurvRank.Rmd
SurvRank/NAMESPACE
SurvRank/R
SurvRank/R/risk_newdat.R SurvRank/R/riskscore_fct.R SurvRank/R/fsRankCoxAUC_fct.R SurvRank/R/fsSurvRankGlmnet.R SurvRank/R/innerAUC_fct.R SurvRank/R/msSurv_fct.R SurvRank/R/fsRankMonsterAUC_fct.R SurvRank/R/fsSurvRankConc.R SurvRank/R/fsRankRfAUC_fct.R SurvRank/R/SurvRank-package.R SurvRank/R/plot_CVsurv.R SurvRank/R/fixRank_fct.R SurvRank/R/crossvalFolds.R SurvRank/R/weigthing_fct.R SurvRank/R/fsSurvRankBoost.R SurvRank/R/fsRankLassoAUC_fct.R SurvRank/R/fsSurvRankRpart.R SurvRank/R/fin_surv_model_fct.R SurvRank/R/fsSurvRankRf.R SurvRank/R/glmnetRank.R SurvRank/R/fsSurvRankCox.R SurvRank/R/fsSurvRankWang.R SurvRank/R/fsRankConcAUC_fct.R SurvRank/R/fsRankWangAUC_fct.R SurvRank/R/fsRankBoostAUC_fct.R SurvRank/R/CVrankSurv_fct.R SurvRank/R/fsSurvRankRandCox.R SurvRank/R/fsRankRpartAUC_fct.R
SurvRank/vignettes
SurvRank/vignettes/SurvRank.Rmd
SurvRank/MD5
SurvRank/build
SurvRank/build/vignette.rds
SurvRank/DESCRIPTION
SurvRank/man
SurvRank/man/fsSurvRankBoost.Rd SurvRank/man/fixRank_fct.Rd SurvRank/man/fsRankCoxAUC_fct.Rd SurvRank/man/crossvalFolds.Rd SurvRank/man/fsRankRfAUC_fct.Rd SurvRank/man/msSurv_fct.Rd SurvRank/man/fsSurvRankRpart.Rd SurvRank/man/glmnetRank.Rd SurvRank/man/fsSurvRankConc.Rd SurvRank/man/fsSurvRankCox.Rd SurvRank/man/fsRankBoostAUC_fct.Rd SurvRank/man/fsSurvRankGlmnet.Rd SurvRank/man/fsSurvRankWang.Rd SurvRank/man/weighting_fct.Rd SurvRank/man/fsRankWangAUC_fct.Rd SurvRank/man/fsRankLassoAUC_fct.Rd SurvRank/man/fin_surv_model_fct.Rd SurvRank/man/fsRankConcAUC_fct.Rd SurvRank/man/innerAUC_fct.Rd SurvRank/man/riskscore_fct.Rd SurvRank/man/risk_newdat.Rd SurvRank/man/CVrankSurv_fct.Rd SurvRank/man/plot_CVsurv.Rd SurvRank/man/fsRankRpartAUC_fct.Rd SurvRank/man/fsSurvRankRf.Rd SurvRank/man/fsRankMonsterAUC_fct.Rd SurvRank/man/fsSurvRankRandCox.Rd

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