mci: Movement Coordination Index (MCI)

In SyncMove: Subsample Temporal Data to Synchronal Events and Compute the MCI

Description

Computes the Movement Coordination Index as described in Mueller, T., et al. (2011).

Usage

mci(x)

Arguments

x

data frame of synchronized relocations of a set of individuals. The data frame must containing the following columns: syncID: numeric (integer), ID marking the synchronization event. For each synchronization event every individual must have a record. Therefore each ID must appear as often as every other ID (e.g. not c(1,1,1,2,2,3,3,3) but c(1,1,1,2,2,2,3,3,3)). utm.easting: numeric, planar x coordinate. Although the name indicates UTM coordinates other planar coordinate systems are also allowed. utm.northing: analogue to utm.easting (Further columns are allowed, but will be ignored. Usually a column naming the individual is present in the data frame.) Such a data frame is returned by the function syncSubsample in package SyncMove (<output>$data[[i]]) with the argument ‘completeSyncsOnly’ set to TRUE.

Value

Returns a numeric vector of MCI values, one for each pair of subsequent synchronization events.

Author(s)

Martin Rimmler (maintainer, martin.rimmler[AT]gmail.com), Thomas Mueller

References

Mueller, T., et al. (2011) How landscape dynamics link individual- to population-level movement patterns: a multispecies comparison of ungulate relocation data, Global Ecology and Biogeography, 20, pages 683–694.

Examples

    # load example data
    data(gazelleRelocations) 

    # create input data frame
    syncRelocs <- syncSubsample(x = gazelleRelocations,
                                startSearch = "2007-09-05 00:00:00",
                                syncIntervalSecs = 3600*24*16,
                                syncAccuracySecs = 3600*24) 

    # calculate MCI
    mci(syncRelocs$data[[1]])

Example output

 [1]  0.317825616  0.153706396  0.011148805  0.333439694  0.327357176
 [6] -0.129572617  0.035848357  0.089358466  0.480498041  0.184815286
[11]  0.730352983  0.001592177  0.506946448  0.162653450  0.301404987
[16] -0.123385509  0.019643408 -0.226141832 -0.107816261

SyncMove documentation built on May 2, 2019, 9:58 a.m.