Description Usage Arguments Value References Examples
This function will translate between sets of biological identifiers.
1 | synergizer(authority = "ensembl", species = "Homo sapiens", domain = "hgnc_symbol", range = "entrezgene", ids = NULL, file = NULL)
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authority |
A character containing any authoritative sources of identifier-mapping information. |
species |
A character containing the Species. Note that the range of species supported depends on the choice of authority. Examples: Homo sapiens, Mus musculus. |
domain |
This is the "namespace" (naming scheme) of the database identifiers the user wishes to translate. Examples: embl, ipi |
range |
This is the "namespace" (naming scheme) to which the user wishes to translate the input identifiers. Examples: embl, ipi |
ids |
a vector containing the ids to be translated |
file |
NULL or a string containing the name of the file where the ids will be saved |
A vector containing the translated ids.
http://llama.mshri.on.ca/synergizer/translate/
1 2 3 4 5 | ## Not run:
library('SynergizerR')
symbols.ids <- synergizer( authority = "ensembl", species = "Homo sapiens", domain="affy_hg_u95av2", range="hgnc_symbol",ids=c("1939_at","1503_at","1454_at") )
entrez.ids <- synergizer( authority = "ensembl", species = "Homo sapiens", domain="hgnc_symbol", range="entrezgene",ids=c("snph", "pja1", "prkdc", "RAD21L1", "Rorc", "kcnk16") )
## End(Not run)
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