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TBRDist: Rearrangement Distances Between Phylogenetic Trees
Fast calculation of tree rearrangement distances. For unrooted trees: Subtree Prune and Regraft (SPR), Tree Bisection and Reconnection (TBR), and Replug distances, using the algorithms of Whidden and Matsen (2017) <doi:10.48550/arXiv.1511.07529>. For rooted trees: rooted SPR (rSPR) distance, using the fixed-parameter algorithms of Whidden, Beiko, and Zeh (2013) <doi:10.1137/110845045>.
Getting started
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Package details |
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| Author | Martin R. Smith [aut, cre, cph] (ORCID: <https://orcid.org/0000-0001-5660-1727>, GitHub: ms609), Chris Whidden [cph] (rspr, uspr, GitHub: cwhidden) |
| Maintainer | Martin R. Smith <martin.smith@durham.ac.uk> |
| License | GPL (>= 3) |
| Version | 2.0.2 |
| URL | https://ms609.github.io/TBRDist/ https://github.com/ms609/TBRDist/ https://github.com/cwhidden/uspr/ https://github.com/cwhidden/rspr/ |
| Package repository | View on CRAN |
| Installation |
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