Files in TBRDist

Rearrangement Distances Between Phylogenetic Trees

MD5

NEWS.md

NAMESPACE

DESCRIPTION

R/RcppExports.R R/rspr.R R/zzz.R R/uspr.R

src/rspr.cpp

src/RcppExports.cpp

src/spr_lookup.cpp

src/uspr.cpp

src/spr/canonize8.h

src/spr/lookup8.h

src/spr/lookup7.h

src/spr/lookup9.h

src/spr/utree_splits.h

src/spr/canonize9.h

src/spr/canonize7.h

src/spr/lookup.h

src/uspr/unode_arena.h

src/uspr/uspr_neighbors_numbered.h

src/uspr/utree.h

src/uspr/uspr.cpp

src/uspr/uspr_neighbors.h

src/uspr/unode.h

src/uspr/tbr.h

src/uspr/uspr.h

src/uspr/tree_numbering.h

src/uspr/uforest.h

src/uspr/uspr_neighbors.cpp

src/rspr/Forest.h

src/rspr/README_spr_supertrees.txt

src/rspr/SiblingPair.h

src/rspr/rspr.cpp

src/rspr/LCA.h

src/rspr/spr_supertree.cpp

src/rspr/hybridization.h

src/rspr/multi_test.sh

src/rspr/rspr.h

src/rspr/node_glom.h

src/rspr/ClusterForest.h

src/rspr/lgt.h

src/rspr/UndoMachine.h

src/rspr/Node.h

src/rspr/fill_matrix.cpp

src/rspr/gpl.txt

src/rspr/ClusterInstance.h

src/rspr/sparse_counts.h

src/rspr/README.txt

src/rspr/Makefile

src/rspr/gen_rooted_trees.pl

src/rspr/R/rspR.r src/rspr/R/rspR_examples.r

src/rspr/test_initial_super_trees/multi_supertree_7.1_test_00.txt

src/rspr/test_initial_super_trees/multi_supertree_7.1_test_00_1.txt

src/rspr/test_initial_super_trees/multi_supertree_7.1_test_00_2.txt

src/rspr/test_trees/cluster_3.txt

src/rspr/test_trees/trees6.txt

src/rspr/test_trees/rho_test2.txt

src/rspr/test_trees/trees_100_17.txt

src/rspr/test_trees/multi_tree_8.2_test_00.txt

src/rspr/test_trees/multi_cluster_test_b.txt

src/rspr/test_trees/cluster_13.txt

src/rspr/test_trees/cluster_5.txt

src/rspr/test_trees/trees2.txt

src/rspr/test_trees/bigtest_mult.txt

src/rspr/test_trees/trees_100_9.txt

src/rspr/test_trees/cluster_test

src/rspr/test_trees/trees_100_24_a.txt

src/rspr/test_trees/cluster_19.txt

src/rspr/test_trees/big_test

src/rspr/test_trees/cluster_6.txt

src/rspr/test_trees/rand_mult_15.txt

src/rspr/test_trees/trees_100_24_mult.txt

src/rspr/test_trees/cluster_12.txt

src/rspr/test_trees/cluster_2.txt

src/rspr/test_trees/trees3.txt

src/rspr/test_trees/multi_tree_8.7_test_00.txt

src/rspr/test_trees/rand_mult_.txt

src/rspr/test_trees/single_cut_test_01.txt

src/rspr/test_trees/trees_100_17_a.txt

src/rspr/test_trees/cluster_1.txt

src/rspr/test_trees/trees_a.txt

src/rspr/test_trees/trees_100_17_mult.txt

src/rspr/test_trees/cluster_7.txt

src/rspr/test_trees/show_moves_test_2.txt

src/rspr/test_trees/cluster_8.txt

src/rspr/test_trees/cluster_16.txt

src/rspr/test_trees/show_moves_test.txt

src/rspr/test_trees/trees7.txt

src/rspr/test_trees/rho_test.txt

src/rspr/test_trees/multi_tree_7.3_test_00.txt

src/rspr/test_trees/multi_tree_8.4_test_00.txt

src/rspr/test_trees/big_test2

src/rspr/test_trees/multi_tree_7.4_test_00.txt

src/rspr/test_trees/cluster_c.txt

src/rspr/test_trees/multi_tree_8.4_test_01.txt

src/rspr/test_trees/cluster_14.txt

src/rspr/test_trees/trees4.txt

src/rspr/test_trees/multi_tree_basic_5.txt

src/rspr/test_trees/rand_mult_xx.txt

src/rspr/test_trees/cluster_10.txt

src/rspr/test_trees/multi_cluster_test

src/rspr/test_trees/mult_big_test

src/rspr/test_trees/cluster_11.txt

src/rspr/test_trees/multi_tree_7.1_test_00.txt

src/rspr/test_trees/cluster_a.txt

src/rspr/test_trees/cluster_9.txt

src/rspr/test_trees/cluster_17.txt

src/rspr/test_trees/multi_tree_8.7_test_01.txt

src/rspr/test_trees/trees_100_9_a.txt

src/rspr/test_trees/multi_tree_8.5_test_00.txt

src/rspr/test_trees/cluster_b.txt

src/rspr/test_trees/cluster_4.txt

src/rspr/test_trees/show_moves_test_1.txt

src/rspr/test_trees/multi_tree_8.6_test_00.txt

src/rspr/test_trees/multi_tree_basic.txt

src/rspr/test_trees/cluster_15.txt

src/rspr/test_trees/cluster_e.txt

src/rspr/test_trees/rand_mult_10.txt

src/rspr/test_trees/single_cut_test_00.txt

src/rspr/test_trees/multi_tree_test_00.txt

src/rspr/test_trees/multi_tree_basic_2.txt

src/rspr/test_trees/cluster_18.txt

src/rspr/test_trees/cluster_f.txt

src/rspr/test_trees/cluster_d.txt

src/rspr/test_trees/trees_100_24.txt

src/rspr/test_trees/trees5.txt

src/rspr/tests/pairwise

inst/CITATION

inst/WORDLIST

inst/doc/TBRDist.R inst/doc/TBRDist.Rmd

inst/doc/TBRDist.html

build/vignette.rds

build/partial.rdb

tests/testthat.R tests/testthat/test-rspr.R tests/testthat/test-src.R tests/testthat/test-uspr.R vignettes/TBRDist.Rmd man/internals.Rd man/RSPRDist.Rd man/TreeRearrangementDistances.Rd man/dot-CheckRooted.Rd man/rspr_dist.Rd man/dot-PrepareTrees.Rd

TBRDist documentation built on Sept. 2, 2026, 5:09 p.m.