choose_lookup: Choose lookup table

In TCRconvertR: Convert TCR Gene Names

Choose lookup table

Description

choose_lookup() determines which CSV lookup table to use based on the the input format (frm) and returns the path to that file.

Usage

choose_lookup(frm, to, species = "human", verbose = TRUE)

Arguments

frm	A string, the input format of TCR data. Must be one of "tenx", "adaptive", "adaptivev2", or "imgt".
to	A string, the output format of TCR data. Must be one of "tenx", "adaptive", "adaptivev2", or "imgt".
species	A string, the species. Optional; defaults to "human".
verbose	A boolean, whether to show messages. Optional; defaults to TRUE

Value

A string, the path to correct lookup table.

Examples

choose_lookup("imgt", "adaptive")

TCRconvertR documentation built on June 8, 2025, 10:43 a.m.