which_frm_cols: Determine input columns to use

In TCRconvertR: Convert TCR Gene Names

Determine input columns to use

Description

which_frm_cols() determines the columns that are expected to hold gene name information in the input file based on the input format (frm). It returns a vector of those column names.

Usage

which_frm_cols(df, frm, frm_cols = NULL, verbose = TRUE)

Arguments

df	Dataframe containing TCR gene names.
frm	A string, the input format of TCR data. Must be one of "tenx", "adaptive", "adaptivev2", or "imgt".
frm_cols	A character vector, the custom column names to use.
verbose	A boolean, whether to show messages. Optional; defaults to TRUE

Value

A character vector, column names to use.

Examples

tcr_file <- get_example_path("tenx.csv")
df <- read.csv(tcr_file)
which_frm_cols(df, "tenx")

TCRconvertR documentation built on June 8, 2025, 10:43 a.m.