TDMR: Tuned Data Mining in R

Tuned Data Mining in R (TDMR) performs a complete tuning of a data mining task.

AuthorWolfgang Konen <wolfgang.konen@fh-koeln.de>, Patrick Koch <patrick.koch@fh-koeln.de>
Date of publication2016-05-19 23:20:09
MaintainerWolfgang Konen <wolfgang.konen@fh-koeln.de>
LicenseGPL (>= 2)
Version1.4

View on CRAN

Man pages

bfgsTuner: Perform BFGS tuning.

cat1: Output objects to 'cat' if 'opts$VERBOSE>=1'.

cat2: Output objects to 'cat' if 'opts$VERBOSE>=2'.

cmaesTuner: Perform CMA-ES tuning (R version).

cma_jTuner: Perform CMA-ES tuning (Java version).

dsetTest: Return test data

dsetTest.TDMdata: Return test data of 'TDMdata' object

dsetTrnVa: Return train-validataion data

dsetTrnVa.TDMdata: Return train-validation data of 'TDMdata' object

lhdTuner: Perform LHD tuning.

makeTdmRandomSeed: Factory method to make a function generating pseudo-random...

Opts: Return the list 'opts'.

powellTuner: Perform Powell's tuning.

predict.TDMenvir: Make a prediction using the last model.

print1: Print objects using 'print' if 'opts$VERBOSE>=1'.

print2: Print objects using 'print' if 'opts$VERBOSE>=2'.

print.TDMclassifier: Print an overview for a 'TDMclassifier' object.

print.TDMdata: Print an overview for a 'TDMdata' object.

print.TDMregressor: Print an overview for a 'TDMregressor' object.

spotTuner: Perform a SPOT tuning.

tdmBigLoop: Tuning and unbiased evaluation in a big loop.

tdmBindResponse: Bind a column to a data frame.

tdmClassify: Core classification function of TDMR.

tdmClassifyLoop: Core classification double loop of TDMR returning a...

tdmClassifySummary: Print summary output for 'result' from 'tdmClassifiyLoop' and...

tdmDefaultsFill: Default values for list 'tdm'.

tdmDispatchTuner: Helper function for 'tdmBigLoop'.

tdmEmbedDataFrame: Embed columns in a data frame.

tdmEnvTAddBstRes: Add BST and RES data frames to an existing 'envT'...

tdmEnvTAddGetters: Add getter functions getBst and getRes to environment envT

tdmEnvTGetOpts: Return list opts from the 'k'-th '.conf'-file

tdmEnvTLoad: Load an 'envT'-type environment from file 'fileRData'.

tdmEnvTMakeNew: Construct a new environment envT of class 'TDMenvir'.

tdmEnvTReadApd: Re-read APD-files (list opts) for an environment envT of...

tdmEnvTSensi: Make a sensitivity plot based on 'envT'

tdmEnvTSetOpts: Set list opts for the 'k'-th '.conf'-file

tdmExecSpotStep: Execute the tuning process with the given 'spotStep'

tdmGraAndLogFinalize: Finalize graphics and log file

tdmGraAndLogInitialize: Initialize graphics and log file.

tdmGraphicCloseDev: Close all open graphic devices.

tdmGraphicCloseWin: Close active file ("png").

tdmGraphicInit: Initialize graphic device.

tdmGraphicNewWin: Initialize a new window.

tdmGraphicToTop: Bring the acitve window to the top

tdmMapDesApply: Apply the mapping from 'des' to 'opts'.

tdmMapDesLoad: Load the mapping files.

tdmModConfmat: Calculate confusion matrix, gain and RGain measure.

tdmModCreateCVindex: Create and return a training-validation-set index vector.

tdmModSortedRFimport: Sort the input variables decreasingly by their RF-importance.

tdmModVote2Target: Analyze how the vote fraction corresponds to reliability of...

tdmOptsDefaultsFill: Fill the current 'opts'.

tdmOptsDefaultsSet: Default values for list 'opts'.

tdmParaBootstrap: Parametric bootstrap: add 'noisy copies' to a data frame...

tdmPlotResMeta: Interactive plots of RES data frames and their metamodels.

tdmPreAddMonomials: Add monomials of degree 2 to a data frame.

tdmPreFindConstVar: Find constant columns.

tdmPreGroupLevels: Group the levels of factor variable in 'dset[,colname]'.

tdmPreLevel2Target: Relate levels of a column with a target (column).

tdmPreNAroughfix: Replace <NA> values with suitable non <NA> values

tdmPrePCA.apply: Apply PCA (Principal Component Analysis) to new data.

tdmPrePCA.train: PCA (Principal Component Analysis) for numeric columns in a...

tdmPreSFA.apply: Apply SFA (Slow Feature Analysis) to new data.

tdmPreSFA.train: SFA (Slow Feature Analysis) for numeric columns in a data...

tdmRandomSeed: Generates pseudo-random random number seeds.

tdmReadCmd: Template function, the default for opts$READ.CMD.

tdmReadData: Read the data accoroding to the settings in 'opts'.

tdmReadData2: Read data accoroding to 'opts' settings.

tdmRegress: Core regression function of TDMR.

tdmRegressLoop: Core regression double loop of TDMR returning a...

tdmRegressSummary: Print summary output for 'result' from 'tdmRegressLoop' and...

tdmROCR: Interactive plot of ROC charts

tdmROCRbase: Single plot of ROC, lift or other chart for a 'TDMclassifier'...

tdmROCR.TDMclassifier: Interactive plot of ROC, lift or other charts for a...

TDMR-package: Tuned Data Mining in R

tdmSplitTestData: Read and split the task data.

tdmStartSpot: Function called by 'spot' to evaluate a DM task during a...

tdmTuneIt: Tuning and unbiased evaluation (single tuning).

unbiasedBestRun_O: Perform unbiased runs with best-solution parameters...

unbiasedRun: Perform unbiased runs with best-solution parameters.

zzz: just to make example check happy

Files in this package

TDMR
TDMR/inst
TDMR/inst/examples
TDMR/inst/examples/ex_tdmClassifyLoop.r
TDMR/inst/examples/ex_SplitTestData.r
TDMR/inst/examples/ex_unbiasedRun.r
TDMR/inst/examples/ex_tdmTuneIt.r
TDMR/inst/examples/ex-winequality
TDMR/inst/examples/ex-winequality/wine_01.conf
TDMR/inst/examples/ex-winequality/wine_01.roi
TDMR/inst/examples/ex-winequality/wine_01.RData
TDMR/inst/examples/ex-winequality/data
TDMR/inst/examples/ex-winequality/data/winequality-red.csv
TDMR/inst/examples/ex-winequality/data/wineDataDescription.txt
TDMR/inst/examples/ex-winequality/data/winequality-white.csv
TDMR/inst/examples/ex-winequality/wine_01.apd
TDMR/inst/examples/ex-winequality/final_wine.r
TDMR/inst/examples/ex-winequality/start_wine.r
TDMR/inst/examples/ex-winequality/main_wine.r
TDMR/inst/examples/ex_demo04Par.r
TDMR/inst/examples/ex_tdmBigLoop.r
TDMR/inst/examples/ex_EnvTSensi.r
TDMR/inst/examples/ex_predictEnvT.r
TDMR/inst/examples/ex_tdmRegress.r
TDMR/inst/examples/ex_tdmRegressLoop.r
TDMR/inst/examples/ex_tdmClassify.r
TDMR/inst/source.tdm.r
TDMR/inst/tdmMapDesign.csv
TDMR/inst/start.tdm.r
TDMR/inst/demo02sonar
TDMR/inst/demo02sonar/start_sonar.r
TDMR/inst/demo02sonar/main_sonar.r
TDMR/inst/demo02sonar/sonar_04.roi
TDMR/inst/demo02sonar/sonar_01.conf
TDMR/inst/demo02sonar/sonar_03.apd
TDMR/inst/demo02sonar/sonar_06.apd
TDMR/inst/demo02sonar/start_tuneIt.r
TDMR/inst/demo02sonar/sonar_05.conf
TDMR/inst/demo02sonar/data
TDMR/inst/demo02sonar/data/sonar.txt
TDMR/inst/demo02sonar/data/sonar.Rdata
TDMR/inst/demo02sonar/sonar_02.roi
TDMR/inst/demo02sonar/start_bigLoop.r
TDMR/inst/demo02sonar/start_rerun.r
TDMR/inst/demo02sonar/sonar_04.apd
TDMR/inst/demo02sonar/outcmaesdisp.dat
TDMR/inst/demo02sonar/sonar_01.roi
TDMR/inst/demo02sonar/sonar_01.apd
TDMR/inst/demo02sonar/sonar_06.conf
TDMR/inst/demo02sonar/demoSonar.RData
TDMR/inst/demo02sonar/sonar_02.conf
TDMR/inst/demo02sonar/sonar_00.apd
TDMR/inst/demo02sonar/sonar_04.conf
TDMR/inst/demo02sonar/sonar_06.roi
TDMR/inst/demo02sonar/sonar_02.apd
TDMR/inst/demo02sonar/sonar_03.conf
TDMR/inst/startFromSource.r
TDMR/inst/doc
TDMR/inst/doc/index.html
TDMR/inst/doc/changes.html
TDMR/inst/doc/TDMR-docu.pdf
TDMR/inst/doc/TDMR-tutorial.pdf
TDMR/inst/doc/aareadme.txt
TDMR/inst/demo01cpu
TDMR/inst/demo01cpu/Rplots.pdf
TDMR/inst/demo01cpu/cpu_01.conf
TDMR/inst/demo01cpu/cpu_01.apd
TDMR/inst/demo01cpu/Rplots2.pdf
TDMR/inst/demo01cpu/cpu_01.roi
TDMR/inst/demo01cpu/data
TDMR/inst/demo01cpu/data/cpu.Rdata
TDMR/inst/demo01cpu/data/cpu.csv
TDMR/inst/demo01cpu/main_cpu.r
TDMR/inst/demo01cpu/start_bigLoop.r
TDMR/inst/demo01cpu/cpu_02.conf
TDMR/inst/demo01cpu/cpu_00.apd
TDMR/inst/demo01cpu/Rplots1.pdf
TDMR/inst/demo01cpu/script_all.R
TDMR/inst/demo01cpu/start_cpu.r
TDMR/NAMESPACE
TDMR/demo
TDMR/demo/demo04cpu.r
TDMR/demo/demo03sonar.r
TDMR/demo/demo05visMeta.r
TDMR/demo/demo00-0classif.r
TDMR/demo/demo07cma_j.r
TDMR/demo/demo08parallel.r
TDMR/demo/demo03sonar_B.r
TDMR/demo/demo03newpredict.r
TDMR/demo/demo00-1regress.r
TDMR/demo/demo01-2cpu.r
TDMR/demo/demo06ROCR.r
TDMR/demo/demo03newdata.r
TDMR/demo/demo02sonar.r
TDMR/demo/00Index
TDMR/demo/demo01-1sonar.r
TDMR/R
TDMR/R/tdmExecSpotStep.r
TDMR/R/tdmGeneralUtils.r
TDMR/R/tdmModelingUtils.r
TDMR/R/tdmRegress.r
TDMR/R/unbiasedBestRun_O.r
TDMR/R/unbiasedRun.r
TDMR/R/tdmMapDesign.r
TDMR/R/tdmOptsDefaults.r
TDMR/R/tdmReadData2.r
TDMR/R/tdmParaBootstrap.r
TDMR/R/tdmEmbedDataFrame.r
TDMR/R/tdmDefaultsFill.r
TDMR/R/tdmClassify.r
TDMR/R/tdmStartSpot.r
TDMR/R/tdmRegressLoop.r
TDMR/R/tdmDispatchTuner.r
TDMR/R/makeTdmRandomSeed.r
TDMR/R/tdmBigLoop.r
TDMR/R/printTDMregressor.r
TDMR/R/tdmTuneIt.r
TDMR/R/tdmReadData.r
TDMR/R/tdmEnvTMakeNew.r
TDMR/R/tdmPreprocUtils.r
TDMR/R/tdmGraphicUtils.r
TDMR/R/tdmClassifyLoop.r
TDMR/R/tdmROCR.r
TDMR/R/tdmGetObj.r
TDMR/R/tdmSplitTestData.r
TDMR/R/tdmPlotResMeta.r
TDMR/R/tdmMetacostRf.r
TDMR/R/printTDMclassifier.r
TDMR/R/tdmStartOther.r
TDMR/MD5
TDMR/DESCRIPTION
TDMR/man
TDMR/man/tdmMapDesApply.Rd TDMR/man/bfgsTuner.Rd TDMR/man/tdmEnvTMakeNew.Rd TDMR/man/tdmPreSFA.train.Rd TDMR/man/dsetTest.Rd TDMR/man/tdmEnvTLoad.Rd TDMR/man/tdmPreLevel2Target.Rd TDMR/man/tdmGraphicToTop.Rd TDMR/man/lhdTuner.Rd TDMR/man/tdmRegress.Rd TDMR/man/predict.TDMenvir.Rd TDMR/man/tdmReadCmd.Rd TDMR/man/tdmGraAndLogFinalize.Rd TDMR/man/unbiasedRun.Rd TDMR/man/print.TDMdata.Rd TDMR/man/Opts.Rd TDMR/man/tdmPrePCA.apply.Rd TDMR/man/spotTuner.Rd TDMR/man/tdmTuneIt.Rd TDMR/man/tdmEmbedDataFrame.Rd TDMR/man/tdmGraphicInit.Rd TDMR/man/tdmModVote2Target.Rd TDMR/man/dsetTest.TDMdata.Rd TDMR/man/tdmROCR.Rd TDMR/man/tdmEnvTGetOpts.Rd TDMR/man/tdmPlotResMeta.Rd TDMR/man/tdmClassify.Rd TDMR/man/tdmParaBootstrap.Rd TDMR/man/cat2.Rd TDMR/man/tdmEnvTAddBstRes.Rd TDMR/man/tdmEnvTSetOpts.Rd TDMR/man/unbiasedBestRun_O.Rd TDMR/man/tdmEnvTAddGetters.Rd TDMR/man/cma_jTuner.Rd TDMR/man/powellTuner.Rd TDMR/man/tdmRandomSeed.Rd TDMR/man/tdmClassifySummary.Rd TDMR/man/dsetTrnVa.Rd TDMR/man/tdmModSortedRFimport.Rd TDMR/man/tdmSplitTestData.Rd TDMR/man/tdmRegressLoop.Rd TDMR/man/print.TDMclassifier.Rd TDMR/man/print1.Rd TDMR/man/tdmDefaultsFill.Rd TDMR/man/tdmPreGroupLevels.Rd TDMR/man/tdmROCR.TDMclassifier.Rd TDMR/man/tdmEnvTReadApd.Rd TDMR/man/tdmGraphicCloseDev.Rd TDMR/man/print2.Rd TDMR/man/tdmPreNAroughfix.Rd TDMR/man/print.TDMregressor.Rd TDMR/man/zzz.Rd TDMR/man/tdmMapDesLoad.Rd TDMR/man/makeTdmRandomSeed.Rd TDMR/man/tdmROCRbase.Rd TDMR/man/TDMR-package.Rd TDMR/man/tdmStartSpot.Rd TDMR/man/tdmExecSpotStep.Rd TDMR/man/cat1.Rd TDMR/man/tdmPrePCA.train.Rd TDMR/man/tdmRegressSummary.Rd TDMR/man/tdmEnvTSensi.Rd TDMR/man/cmaesTuner.Rd TDMR/man/tdmReadData.Rd TDMR/man/tdmGraphicNewWin.Rd TDMR/man/tdmPreFindConstVar.Rd TDMR/man/tdmPreAddMonomials.Rd TDMR/man/tdmModConfmat.Rd TDMR/man/tdmBindResponse.Rd TDMR/man/tdmGraphicCloseWin.Rd TDMR/man/dsetTrnVa.TDMdata.Rd TDMR/man/tdmBigLoop.Rd TDMR/man/tdmOptsDefaultsSet.Rd TDMR/man/tdmClassifyLoop.Rd TDMR/man/tdmDispatchTuner.Rd TDMR/man/tdmModCreateCVindex.Rd TDMR/man/tdmReadData2.Rd TDMR/man/tdmOptsDefaultsFill.Rd TDMR/man/tdmPreSFA.apply.Rd TDMR/man/tdmGraAndLogInitialize.Rd

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