tepPLSCA: Partial Least Squares-Correspondence Analysis

In TExPosition: Two-Table ExPosition

Partial Least Squares-Correspondence Analysis

Description

Partial Least Squares-Correspondence Analysis (PLSCA) via TExPosition.

Usage

tepPLSCA(
  DATA1,
  DATA2,
  make_data1_nominal = FALSE,
  make_data2_nominal = FALSE,
  DESIGN = NULL,
  make_design_nominal = TRUE,
  symmetric = TRUE,
  graphs = TRUE,
  k = 0
)

Arguments

DATA1	Data matrix 1 (X), must be categorical (like MCA) or in disjunctive code see make_data1_nominal.
DATA2	Data matrix 2 (Y), must be categorical (like MCA) or in disjunctive code see make_data2_nominal.
make_data1_nominal	a boolean. If TRUE (default), DATA1 is recoded as a dummy-coded matrix. If FALSE, DATA1 is a dummy-coded matrix.
make_data2_nominal	a boolean. If TRUE (default), DATA2 is recoded as a dummy-coded matrix. If FALSE, DATA2 is a dummy-coded matrix.
DESIGN	a design matrix to indicate if rows belong to groups.
make_design_nominal	a boolean. If TRUE (default), DESIGN is a vector that indicates groups (and will be dummy-coded). If FALSE, DESIGN is a dummy-coded matrix.
symmetric	a boolean. If TRUE (default) symmetric factor scores for rows.
graphs	a boolean. If TRUE (default), graphs and plots are provided (via tepGraphs)
k	number of components to return.

Details

This implementation of Partial Least Squares is for two categorical data sets (Beaton et al., 2013), and based on the PLS method proposed by Tucker (1958) and again by Bookstein (1994).

Value

See epCA (and also coreCA) for details on what is returned. In addition to the values returned:

W1	Weights for columns of DATA1, replaces M from coreCA.
W2	Weights for columns of DATA2, replaces W from coreCA.
lx	latent variables from DATA1 computed for observations
ly	latent variables from DATA2 computed for observations

Author(s)

Derek Beaton, Hervé Abdi

References

Tucker, L. R. (1958). An inter-battery method of factor analysis. Psychometrika, 23(2), 111–136.
Bookstein, F., (1994). Partial least squares: a dose–response model for measurement in the behavioral and brain sciences. Psycoloquy 5 (23)
Abdi, H. (2007). Singular Value Decomposition (SVD) and Generalized Singular Value Decomposition (GSVD). In N.J. Salkind (Ed.): Encyclopedia of Measurement and Statistics.Thousand Oaks (CA): Sage. pp. 907-912.
Krishnan, A., Williams, L. J., McIntosh, A. R., & Abdi, H. (2011). Partial Least Squares (PLS) methods for neuroimaging: A tutorial and review. NeuroImage, 56(2), 455 – 475.
Beaton, D., Filbey, F., & Abdi H. (in press, 2013). Integrating partial least squares correlation and correspondence analysis for nominal data. In Abdi, H., Chin, W., Esposito Vinzi, V., Russolillo, G., & Trinchera, L. (Eds.), New Perspectives in Partial Least Squares and Related Methods. New York: Springer Verlag.

See Also

coreCA, epCA, epMCA, tepDICA

Examples

	data(snps.druguse)
	plsca.res <- tepPLSCA(snps.druguse$DATA1,snps.druguse$DATA2,
			make_data1_nominal=TRUE,make_data2_nominal=TRUE)

TExPosition documentation built on April 15, 2025, 9:06 a.m.