TFMPvalue: Efficient and Accurate P-Value Computation for Position Weight Matrices

In putative Transcription Factor Binding Sites (TFBSs) identification from sequence/alignments, we are interested in the significance of certain match score. TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. This package is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15.

AuthorGe Tan <ge.tan09@imperial.ac.uk>
Date of publication2015-11-29 19:19:46
MaintainerGe Tan <ge.tan09@imperial.ac.uk>
LicenseGPL-2
Version0.0.6
https://github.com/ge11232002/TFMPvalue

View on CRAN

Files in this package

TFMPvalue
TFMPvalue/inst
TFMPvalue/inst/TFMPvalueBuild
TFMPvalue/inst/TFMPvalueBuild/build.R
TFMPvalue/tests
TFMPvalue/tests/testthat
TFMPvalue/tests/testthat/test_pv2sc.R
TFMPvalue/tests/testthat/test_sc2pv.R
TFMPvalue/tests/testthat/test_lazyScore.R
TFMPvalue/src
TFMPvalue/src/ArgumentException.h
TFMPvalue/src/FileException.cpp
TFMPvalue/src/Matrix.cpp
TFMPvalue/src/TFMMain.cpp
TFMPvalue/src/Matrix.h
TFMPvalue/src/ArgumentException.cpp
TFMPvalue/src/ParseException.cpp
TFMPvalue/src/FileException.h
TFMPvalue/src/TFMpvalue.cpp
TFMPvalue/src/TFMpvalue.h
TFMPvalue/src/ParseException.h
TFMPvalue/NAMESPACE
TFMPvalue/R
TFMPvalue/R/TFMPvalue-lazyScore.R TFMPvalue/R/util.R TFMPvalue/R/TFMPvalue-pv2sc.R TFMPvalue/R/TFMPvalue-sc2pv.R
TFMPvalue/MD5
TFMPvalue/DESCRIPTION
TFMPvalue/man
TFMPvalue/man/TFMPvalue-lazyScore.Rd TFMPvalue/man/TFMPvalue-sc2pv.Rd TFMPvalue/man/TFMPvalue-pv2sc.Rd TFMPvalue/man/TFMPvalue-package.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.