TFMPvalue: Efficient and Accurate P-Value Computation for Position Weight Matrices
Version 0.0.6

In putative Transcription Factor Binding Sites (TFBSs) identification from sequence/alignments, we are interested in the significance of certain match score. TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. This package is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15.

Browse man pages Browse package API and functions Browse package files

AuthorGe Tan <ge.tan09@imperial.ac.uk>
Date of publication2015-11-29 19:19:46
MaintainerGe Tan <ge.tan09@imperial.ac.uk>
LicenseGPL-2
Version0.0.6
URL https://github.com/ge11232002/TFMPvalue
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("TFMPvalue")

Man pages

TFMPvalue-lazyScore: Compute the score from P-value.
TFMPvalue-package: Efficient and accurate P-value computation for Position...
TFMPvalue-pv2sc: Compute score from P-value.
TFMPvalue-sc2pv: Compute P-value from score.

Functions

TFMLazyScore Man page Source code
TFMPvalue-package Man page
TFMpv2sc Man page Source code
TFMsc2pv Man page Source code
normargMat Source code
normargPriorParams Source code

Files

inst
inst/TFMPvalueBuild
inst/TFMPvalueBuild/build.R
tests
tests/testthat
tests/testthat/test_pv2sc.R
tests/testthat/test_sc2pv.R
tests/testthat/test_lazyScore.R
src
src/ArgumentException.h
src/FileException.cpp
src/Matrix.cpp
src/TFMMain.cpp
src/Matrix.h
src/ArgumentException.cpp
src/ParseException.cpp
src/FileException.h
src/TFMpvalue.cpp
src/TFMpvalue.h
src/ParseException.h
NAMESPACE
R
R/TFMPvalue-lazyScore.R
R/util.R
R/TFMPvalue-pv2sc.R
R/TFMPvalue-sc2pv.R
MD5
DESCRIPTION
man
man/TFMPvalue-lazyScore.Rd
man/TFMPvalue-sc2pv.Rd
man/TFMPvalue-pv2sc.Rd
man/TFMPvalue-package.Rd
TFMPvalue documentation built on May 20, 2017, 4:26 a.m.