Fitting Separable Nonlinear Models in Spectroscopy and Microscopy

amp-class | Class "amp" for diagonal matrix model specification. |

baseIRF | Baseline subtraction from a vector, usually representing an... |

dat-class | Class "dat" for model and data storage |

denS4 | Time-resolved absorption data |

divergeZimage | Plots a matrix with a diverging palette, with the center... |

donorAcceptorTagged | Fluorescent lifetime imaging microscopy (FLIM) data |

donorTagged | Fluorescent lifetime imaging microscopy (FLIM) data |

efit2file | covert 'tim' FORTRAN efit files to plain matrices in ASCII... |

examineFit | Examines the results of a call to fitModel |

fit-class | Class "fit" to store the results of model fitting associated... |

fitModel | Performs optimization of (possibly multidataset) models. |

FLIMplots | Functions to plot FLIM results. |

getClpindepX | Generic function getClpindepX in Package 'TIMP' |

getResid | For data correction, fits a model (but ignores plotting... |

getResults | Functions to print and return parts of the object returned by... |

initModel | Defines the model to be used in analysis. |

internals | TIMP function used internally |

kin-class | Class "kin" for kinetic model storage. |

kinopt-class | Class "kinopt" stores options for fitting and plotting... |

mass-class | Class "mass" for mass spectrometry model storage. |

massopt-class | Class "massopt" stores options for fitting and plotting... |

mea_IRF | Instrument response for fluorescent lifetime imaging... |

modifyModel | Allows the starting values for parameters associated with a... |

multimodel-class | Class "multimodel" for storage of multidataset models, data... |

multitheta-class | Class "multitheta" that stores a list with one element of... |

opt-class | Class "opt" stores options for fitting and plotting |

outlierCorr | Finds and removes outliers from a datasets |

plotter | Generic function plotter in Package 'TIMP' |

preProcess | Performs preprocessing on data stored as an objects of class... |

readclp0 | This function reads in a specification of constraints to zero... |

readData | This function reads in data the ivo file format |

res-class | Class "res" to store the results of model fitting associated... |

residPart | Generic function residPart in Package 'TIMP' |

spec-class | Class "spec" for the storage of spectral models. |

specopt-class | Class "specopt" stores options for fitting and plotting... |

sumKinSpecEst | Makes a summary plot of spectra associated with kinetic... |

target | Ultrafast time-resolved fluorescence data |

theta-class | Class "theta" for storage of nonlinear parameter estimates |

TIMP-package | a problem solving environment for fitting separable nonlinear... |

writeAverage | Writes the average of scans stored in a file to a new file in... |

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