TNRS_base: Resolve a small batch of plant taxonomic names

In TNRS: Taxonomic Name Resolution Service

Resolve a small batch of plant taxonomic names

Description

Resolve a small batch of plant taxonomic names

Usage

TNRS_base(
  taxonomic_names,
  sources = c("wcvp", "wfo"),
  classification = "wfo",
  mode = "resolve",
  matches = "best",
  accuracy = NULL,
  skip_internet_check = FALSE,
  ...
)

Arguments

taxonomic_names	Data.frame containing two columns: 1) Row number, 2) Taxonomic names to be resolved (or parsed). Alternatively, a character vector of names can be supplied.
sources	Character. Taxonomic sources to use. Default is c("wcvp", "wfo"). Options include "wfo", and "wcvp".
classification	Character. Family classification to use. Currently options include "wfo" (the default).
mode	Character. Options are "resolve" and "parse". Default option is "resolve"
matches	Character. Should all matches be returned ("all") or only the best match ("best", the default)?
accuracy	numeric. If specified, only matches with a score greater than or equal to the supplied accuracy level will be returned.
skip_internet_check	Should the check for internet connectivity be skipped? Default is FALSE.
...	Additional parameters passed to internal functions

Value

Dataframe containing TNRS results.

Note

This function is primarily used as an internal function of TNRS and can only handle relatively small batches of names.

usda = United States Department of Agriculture, wfo = World Flora Online, wcvp = World Checklist of Vascular Plants.

TNRS documentation built on June 24, 2024, 5:19 p.m.