TNRS_core: Handle API access and format

In TNRS: Taxonomic Name Resolution Service

Handle API access and format

Description

Internal function for handling accessing the API,data formatting, and errors

Usage

TNRS_core(
  url = "https://tnrsapi.xyz/tnrs_api.php",
  mode = "resolve",
  data_json = NULL,
  sources = c("wcvp", "wfo"),
  classification = "wfo",
  matches = "best",
  accuracy = NULL,
  batches = NULL
)

Arguments

url	Server URL to use. Defaults to the stable production version
mode	Character. Options are "resolve" and "parse". Default option is "resolve"
data_json	Either NULL (the default) or properly formatted json
sources	Character. Taxonomic sources to use. Default is c("wcvp", "wfo"). Options include "wfo", "wcvp", and "cact".
classification	Character. Family classification to use. Currently options include "wfo" (the default).
matches	Character. Should all matches be returned ("all") or only the best match ("best", the default)?
accuracy	numeric. If specified, only matches with a score greater than or equal to the supplied accuracy level will be returned.
batches	NULL or Numeric. Optional number of batches to divide the request into for parallel processing. CUrrently isn't implemented

Note

For more information on current sources, use the function TNRS_sources()

TNRS documentation built on June 24, 2024, 5:19 p.m.