TRAMPR: 'TRFLP' Analysis and Matching Package for R

Matching terminal restriction fragment length polymorphism ('TRFLP') profiles between unknown samples and a database of known samples. TRAMPR facilitates analysis of many unknown profiles at once, and provides tools for working directly with electrophoresis output through to generating summaries suitable for community analyses with R's rich set of statistical functions. TRAMPR also resolves the issues of multiple 'TRFLP' profiles within a species, and shared 'TRFLP' profiles across species.

AuthorRich FitzJohn & Ian Dickie
Date of publication2016-06-09 13:17:58
MaintainerRich FitzJohn <rich.fitzjohn@gmail.com>
LicenseGPL-2
Version1.0-8

View on CRAN

Functions

absolute.min Man page
add.known Man page
add.known.TRAMP Man page
add.known.TRAMPknowns Man page
build.knowns Man page
classify Man page
combine Man page
combine.TRAMP Man page
combine.TRAMPknowns Man page
combine.TRAMPsamples Man page
create.diffsmatrix Man page
demo.knowns Man page
demo.samples Man page
group.knowns Man page
group.knowns.TRAMP Man page
group.knowns.TRAMPknowns Man page
labels.TRAMPknowns Man page
labels.TRAMPsamples Man page
load.abi Man page
load.abi.create.info Man page
load.abi.create.template Man page
peakscanner.to.genemapper Man page
plot.TRAMP Man page
plot.TRAMPknowns Man page
plot.TRAMPsamples Man page
read.abi Man page
read.TRAMPknowns Man page
read.TRAMPsamples Man page
rebuild.TRAMP Man page
remove.TRAMP.match Man page
summary.TRAMP Man page
summary.TRAMPknowns Man page
summary.TRAMPsamples Man page
TRAMP Man page
TRAMPindexing Man page
TRAMPknowns Man page
[.TRAMPknowns Man page
TRAMP.plotone Man page
TRAMPR Man page
TRAMPR-package Man page
TRAMPsamples Man page
[.TRAMPsamples Man page
TRAMPsamples.plotone Man page
update.TRAMP Man page
write.TRAMPknowns Man page
write.TRAMPsamples Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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