Man pages for TropFishR
Tropical Fisheries Analysis
| alba | Length-frequency data of the clam Abra alba |
| Bhattacharya | Bhattacharya's method |
| bream | bream data |
| catchCurve | Catch curve |
| date2yeardec | Date - Year conversion |
| ELEFAN | ELEFAN |
| ELEFAN_GA | ELEFAN_GA |
| ELEFAN_SA | ELEFAN_SA |
| emperor | Emperor data |
| gillnet | Gillnet data |
| gillnetfit | Millar's original gillnet selectivity fitting function |
| goatfish | Yellowstriped goatfish data |
| growth_length_age | Estimation of growth parameter using length-at-age data |
| growth_tagging | Growth from tagging data |
| haddock | Haddock data |
| hake | Hake data |
| lfqCreate | Create lfq data from length measurements |
| lfqFitCurves | Fitting VBGF growth curves through lfq data |
| lfqModify | Modify lfq data for further analysis |
| lfqRestructure | Restructuring of length frequency data |
| M_empirical | Empirical formulas for the estimation of natural mortality |
| plot.Bhattacharya | Bhattacharya plot |
| plot.catchCurve | Plotting catch curve |
| plot.lfq | Plotting of length frequency data (with VBGF curves) |
| plot.predict_mod | Plotting prediction models yield per recruit and Thompson &... |
| plot.prod_mod | Plotting production models |
| plot.prod_mod_ts | Plotting time series production models |
| plot.recruitment | Plot of recruitment patterns |
| plot.select | Selectivity plot |
| plot.select_Millar | Millar's selectivity plot |
| plot.VPA | VPA plot |
| powell_wetherall | Powell-Wetherall method |
| predict_mod | Prediction models |
| prod_mod | Production models |
| prod_mod_ts | Production models with time series fitting |
| rcurves_Millar | Predict gillnet selectivity (old Millar method) |
| recruitment | Recruitment patterns |
| rtypes_Millar | Millar's selectivity types |
| select | Selectivity model |
| select_Millar | Millar's selectivity model |
| select_ogive | Selectivity patterns |
| shrimps | Shrimp data |
| startingPoint2tanchor | Convert FiSAT's starting point to t_anchor value |
| stock_sim | Stock simulation |
| synCAA1 | Synthetic Catch-at-age data I |
| synCAA2 | Synthetic Catch-at-age data II |
| synCPUE | Synthetical catch per unit of effort (CPUE) dataset |
| synLFQ1 | Synthetic length-frequency data I |
| synLFQ2 | Synthetic length frequency data II |
| synLFQ3 | Synthetic length frequency data III |
| synLFQ4 | Synthetic length-frequency data IV (with seasonal... |
| synLFQ5 | Synthetic length-frequency data V (without seasonal... |
| synLFQ6 | Synthetic length-frequency data VI (without seasonal... |
| synLFQ7 | Synthetic length-frequency data VII with seasonal oscillation |
| synLFQ8 | Synthetic length-frequency data VIII with variable harvest... |
| tilapia | Tilapia data |
| trammelnet | Trammel net data |
| trawl_fishery_Java | Data from the trawl fishery off the North coast of Java |
| VBGF | Von Bertalanffy Growth function (VBGF) |
| VPA | Virtual Population Analysis (VPA) |
| whiting | Whiting data |
| yeardec2date | Year - Date conversion |
| ypr | Yield per recruit |
| ypr_sel | Yield per recruit with selection ogive |
| Z_BevertonHolt | Beverton & Holt's Z-Equations |
| Z_CPUE | Estimate Z from CPUE data |
