VBLPCM: Variational Bayes Latent Position Cluster Model for Networks

Fit and simulate latent position and cluster models for network data, using a fast Variational Bayes approximation.

AuthorMichael Salter-Townshend
Date of publication2015-12-18 23:39:11
MaintainerMichael Salter-Townshend <mike.saltertownshend@gmail.com>
LicenseGPL (>= 2)
Version2.4.4
http://www.r-project.org, https://sites.google.com/site/mikesaltertownshend/software/

View on CRAN

Man pages

aids: aids blogs data as a "network" object

E_to_Y: create an adjacency matrix from an edgelist.

fruchterman_reingold: Perform Fruchterman-Reingold layout of a network in 2 or more...

gof.vblpcm: Goodness of fit based on simulations from the fitted object.

hops_to_hopslist: create a handy matrix of vectors to store the hopslist

log_like_forces: create an initial configuration for the latent positions.

plot.vblpcm: plot the posterior latent positions and groupings and network

predict.vblpcm: Find all link probabilities

print.vblpcm: print the fitted vblpcm object

sampson: Cumulative network of positive affection within a monastery...

simulated.network: simulated.network

summary.vblpcm: summary of a fitted vblpcm object.

vblpcmBIC: calculate the BIC for the fitted VBLPCM object

vblpcmcovs: create the design matrix for the network analysis

vblpcmdrawpie: add a piechart of group memberships of a node to a network...

vblpcmfit: fit the variational model through EM type iterations

vblpcmgroups: list the maximum VB a-posteriori group memberships.

VBLPCM-internal: Internal VBLPCM objects

vblpcmKL: print and returns the Kullback-Leibler divergence from the...

VBLPCM-package: VBLPCM: Variational Bayes for the Latent Position Cluster...

vblpcmroc: ROC curve plot for vblpcmfit

vblpcmstart: Generate sensible starting configuration for the variational...

Y_to_E: calculate the edgelist for a given adjacency matrix

Y_to_M: calculate the missing edges as an edgelist from an adjacency...

Y_to_nonE: calculate a non-edge list from an adjacency matrix

Functions

aids Man page
aids.net Man page
E_to_Y Man page
fruchterman_reingold Man page
gof.vblpcm Man page
hops_to_hopslist Man page
log_like_forces Man page
.onLoad Man page
plot.vblpcm Man page
predict.vblpcm Man page
print.vblpcm Man page
samplike Man page
sampson Man page
summary.vblpcm Man page
VBLPCM Man page
vblpcmbic Man page
vblpcmcovs Man page
vblpcmdrawpie Man page
vblpcmfit Man page
vblpcmgroups Man page
vblpcmKL Man page
VBLPCM-package Man page
vblpcmroc Man page
vblpcmstart Man page
Y Man page
Y_to_E Man page
Y_to_M Man page
Y_to_nonE Man page

Files

VBLPCM
VBLPCM/inst
VBLPCM/inst/CITATION
VBLPCM/configure.ac
VBLPCM/src
VBLPCM/src/funcs.c
VBLPCM/src/adjacency_to_edges.c
VBLPCM/src/KL_funcs.c
VBLPCM/src/fruchterman_reingold.c
VBLPCM/src/log_like_forces.c
VBLPCM/src/optim.c
VBLPCM/src/Makevars.in
VBLPCM/src/VBLPCM.c
VBLPCM/src/Makevars.win
VBLPCM/src/bb.c
VBLPCM/src/likelihoods.c
VBLPCM/src/headers.h
VBLPCM/NAMESPACE
VBLPCM/CHANGELOG
VBLPCM/data
VBLPCM/data/sampson.rda
VBLPCM/data/simulated.network.rda
VBLPCM/data/aids.rda
VBLPCM/R
VBLPCM/R/covs.R VBLPCM/R/gof.vblpcm.R VBLPCM/R/vb_bic.R VBLPCM/R/predict.R VBLPCM/R/log_like_forces.R VBLPCM/R/summarise_groups.R VBLPCM/R/VBLPCM.R VBLPCM/R/fruchterman_reingold.R VBLPCM/R/KL.R VBLPCM/R/adjacency_to_edges.R VBLPCM/R/plot_network.R VBLPCM/R/summary.vblpcm.R VBLPCM/R/print.vblpcm.R VBLPCM/R/roc.R VBLPCM/R/start.R VBLPCM/R/zzz.R
VBLPCM/MD5
VBLPCM/DESCRIPTION
VBLPCM/configure
VBLPCM/man
VBLPCM/man/plot.vblpcm.Rd VBLPCM/man/hops_to_hopslist.Rd VBLPCM/man/fruchterman_reingold.Rd VBLPCM/man/simulated.network.Rd VBLPCM/man/Y_to_E.Rd VBLPCM/man/vblpcmBIC.Rd VBLPCM/man/vblpcmroc.Rd VBLPCM/man/predict.vblpcm.Rd VBLPCM/man/E_to_Y.Rd VBLPCM/man/vblpcmKL.Rd VBLPCM/man/summary.vblpcm.Rd VBLPCM/man/aids.Rd VBLPCM/man/log_like_forces.Rd VBLPCM/man/gof.vblpcm.Rd VBLPCM/man/vblpcmdrawpie.Rd VBLPCM/man/Y_to_M.Rd VBLPCM/man/vblpcmcovs.Rd VBLPCM/man/vblpcmstart.Rd VBLPCM/man/Y_to_nonE.Rd VBLPCM/man/sampson.Rd VBLPCM/man/vblpcmfit.Rd VBLPCM/man/vblpcmgroups.Rd VBLPCM/man/VBLPCM-internal.Rd VBLPCM/man/print.vblpcm.Rd VBLPCM/man/VBLPCM-package.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.