VBLPCM: Variational Bayes Latent Position Cluster Model for Networks

Fit and simulate latent position and cluster models for network data, using a fast Variational Bayes approximation.

AuthorMichael Salter-Townshend
Date of publication2015-12-18 23:39:11
MaintainerMichael Salter-Townshend <mike.saltertownshend@gmail.com>
LicenseGPL (>= 2)
Version2.4.4
http://www.r-project.org, https://sites.google.com/site/mikesaltertownshend/software/

View on CRAN

Man pages

aids: aids blogs data as a "network" object

E_to_Y: create an adjacency matrix from an edgelist.

fruchterman_reingold: Perform Fruchterman-Reingold layout of a network in 2 or more...

gof.vblpcm: Goodness of fit based on simulations from the fitted object.

hops_to_hopslist: create a handy matrix of vectors to store the hopslist

log_like_forces: create an initial configuration for the latent positions.

plot.vblpcm: plot the posterior latent positions and groupings and network

predict.vblpcm: Find all link probabilities

print.vblpcm: print the fitted vblpcm object

sampson: Cumulative network of positive affection within a monastery...

simulated.network: simulated.network

summary.vblpcm: summary of a fitted vblpcm object.

vblpcmBIC: calculate the BIC for the fitted VBLPCM object

vblpcmcovs: create the design matrix for the network analysis

vblpcmdrawpie: add a piechart of group memberships of a node to a network...

vblpcmfit: fit the variational model through EM type iterations

vblpcmgroups: list the maximum VB a-posteriori group memberships.

VBLPCM-internal: Internal VBLPCM objects

vblpcmKL: print and returns the Kullback-Leibler divergence from the...

VBLPCM-package: VBLPCM: Variational Bayes for the Latent Position Cluster...

vblpcmroc: ROC curve plot for vblpcmfit

vblpcmstart: Generate sensible starting configuration for the variational...

Y_to_E: calculate the edgelist for a given adjacency matrix

Y_to_M: calculate the missing edges as an edgelist from an adjacency...

Y_to_nonE: calculate a non-edge list from an adjacency matrix

Files in this package

VBLPCM
VBLPCM/inst
VBLPCM/inst/CITATION
VBLPCM/configure.ac
VBLPCM/src
VBLPCM/src/funcs.c
VBLPCM/src/adjacency_to_edges.c
VBLPCM/src/KL_funcs.c
VBLPCM/src/fruchterman_reingold.c
VBLPCM/src/log_like_forces.c
VBLPCM/src/optim.c
VBLPCM/src/Makevars.in
VBLPCM/src/VBLPCM.c
VBLPCM/src/Makevars.win
VBLPCM/src/bb.c
VBLPCM/src/likelihoods.c
VBLPCM/src/headers.h
VBLPCM/NAMESPACE
VBLPCM/CHANGELOG
VBLPCM/data
VBLPCM/data/sampson.rda
VBLPCM/data/simulated.network.rda
VBLPCM/data/aids.rda
VBLPCM/R
VBLPCM/R/covs.R VBLPCM/R/gof.vblpcm.R VBLPCM/R/vb_bic.R VBLPCM/R/predict.R VBLPCM/R/log_like_forces.R VBLPCM/R/summarise_groups.R VBLPCM/R/VBLPCM.R VBLPCM/R/fruchterman_reingold.R VBLPCM/R/KL.R VBLPCM/R/adjacency_to_edges.R VBLPCM/R/plot_network.R VBLPCM/R/summary.vblpcm.R VBLPCM/R/print.vblpcm.R VBLPCM/R/roc.R VBLPCM/R/start.R VBLPCM/R/zzz.R
VBLPCM/MD5
VBLPCM/DESCRIPTION
VBLPCM/configure
VBLPCM/man
VBLPCM/man/plot.vblpcm.Rd VBLPCM/man/hops_to_hopslist.Rd VBLPCM/man/fruchterman_reingold.Rd VBLPCM/man/simulated.network.Rd VBLPCM/man/Y_to_E.Rd VBLPCM/man/vblpcmBIC.Rd VBLPCM/man/vblpcmroc.Rd VBLPCM/man/predict.vblpcm.Rd VBLPCM/man/E_to_Y.Rd VBLPCM/man/vblpcmKL.Rd VBLPCM/man/summary.vblpcm.Rd VBLPCM/man/aids.Rd VBLPCM/man/log_like_forces.Rd VBLPCM/man/gof.vblpcm.Rd VBLPCM/man/vblpcmdrawpie.Rd VBLPCM/man/Y_to_M.Rd VBLPCM/man/vblpcmcovs.Rd VBLPCM/man/vblpcmstart.Rd VBLPCM/man/Y_to_nonE.Rd VBLPCM/man/sampson.Rd VBLPCM/man/vblpcmfit.Rd VBLPCM/man/vblpcmgroups.Rd VBLPCM/man/VBLPCM-internal.Rd VBLPCM/man/print.vblpcm.Rd VBLPCM/man/VBLPCM-package.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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