VRPM: Visualizing Risk Prediction Models

This is a package to visualize risk prediction models. For each predictor, a color bar represents the contribution to the linear predictor or latent variable. A conversion from the linear predictor to the estimated risk or survival is also given. (Cumulative) contribution charts enable to visualize how the estimated risk for one particular observation is obtained by the model. Several options allow to choose different color maps, and to select the zero level of the contributions. The package is able to deal with 'glm', 'coxph', 'mfp', 'multinom' and 'ksvm' objects. For 'ksvm' objects, the visualization is not always exact. Functions providing tools to indicate the accuracy of the approximation are provided in addition to the visualization.

Install the latest version of this package by entering the following in R:
install.packages("VRPM")
AuthorVanya Van Belle
Date of publication2016-09-01 15:41:33
MaintainerVanya Van Belle <vanya.vanbelle@esat.kuleuven.be>
LicenseGPL-3
Version1.1

View on CRAN

Files

inst
inst/examples
inst/examples/HTMLsummaryex.R inst/examples/plotperfex.R inst/examples/colplotex.R inst/examples/cchartex.R inst/examples/ccchartex.R inst/examples/Appex.R
inst/NEWS
inst/shiny-examples
inst/shiny-examples/Iris
inst/shiny-examples/Iris/ui.R inst/shiny-examples/Iris/server.R
inst/shiny-examples/Iris/lps.png
inst/shiny-examples/Iris/colplot.png
inst/shiny-examples/Iris/www
inst/shiny-examples/Iris/www/empty.png
inst/shiny-examples/Iris/probs.png
inst/shiny-examples/Iris/ROC.png
inst/shiny-examples/Iris/links.png
inst/shiny-examples/Iris/contributions2.png
inst/shiny-examples/Iris/outcomes.png
inst/shiny-examples/Iris/ccchart.png
inst/shiny-examples/Iris/cchart.png
inst/shiny-examples/Iris/corrplot.png
inst/shiny-examples/Iris/ff.png
inst/shiny-examples/IntermittentClaudication
inst/shiny-examples/IntermittentClaudication/ui.R inst/shiny-examples/IntermittentClaudication/server.R
inst/shiny-examples/IntermittentClaudication/colplot.png
inst/shiny-examples/IntermittentClaudication/www
inst/shiny-examples/IntermittentClaudication/www/empty.png
inst/shiny-examples/IntermittentClaudication/helpers.R
inst/shiny-examples/IntermittentClaudication/ccchart.png
inst/shiny-examples/IntermittentClaudication/cchart.png
inst/shiny-examples/xsnz
inst/shiny-examples/xsnz/ui.R inst/shiny-examples/xsnz/server.R
inst/shiny-examples/xsnz/ccchartp_widowed_ccchart.png
inst/shiny-examples/xsnz/colplotp_married.png
inst/shiny-examples/xsnz/www
inst/shiny-examples/xsnz/www/empty.png
inst/shiny-examples/xsnz/colplot_patientsummary.png
inst/shiny-examples/xsnz/ccchart_divorced_ccchart.png
inst/shiny-examples/xsnz/colplotp_married_wing.png
inst/shiny-examples/xsnz/cchart_divorced_cchart.png
inst/shiny-examples/xsnz/colplotp_divorced.png
inst/shiny-examples/xsnz/colplotp_single.png
inst/shiny-examples/xsnz/ccchartp_divorced_ccchart.png
inst/shiny-examples/xsnz/colplot_widowed.png
inst/shiny-examples/xsnz/colplotp_widowed.png
inst/shiny-examples/xsnz/colplot_divorced.png
inst/shiny-examples/xsnz/colplot_patientsummary2.png
inst/shiny-examples/xsnz/ccchart_widowed_ccchart.png
inst/shiny-examples/xsnz/cchart_married_cchart.png
inst/shiny-examples/xsnz/cchartp_divorced_cchart.png
inst/shiny-examples/xsnz/ccchartp_married_ccchart.png
inst/shiny-examples/xsnz/cchartp_single_cchart.png
inst/shiny-examples/xsnz/ccchartp_single_ccchart.png
inst/shiny-examples/xsnz/cchartp_widowed_cchart.png
inst/shiny-examples/xsnz/cchart_widowed_cchart.png
inst/shiny-examples/xsnz/colplotp_divorced_wing.png
inst/shiny-examples/xsnz/ccchart_married_ccchart.png
inst/shiny-examples/xsnz/cchartp_married_cchart.png
inst/shiny-examples/xsnz/colplot_married.png
inst/shiny-examples/xsnz/colplotp_widowed_wing.png
inst/shiny-examples/Pima
inst/shiny-examples/Pima/ui.R inst/shiny-examples/Pima/server.R
inst/shiny-examples/Pima/lps.png
inst/shiny-examples/Pima/colplot.png
inst/shiny-examples/Pima/www
inst/shiny-examples/Pima/www/empty.png
inst/shiny-examples/Pima/probs.png
inst/shiny-examples/Pima/colplot_B.png
inst/shiny-examples/Pima/ROC.png
inst/shiny-examples/Pima/links.png
inst/shiny-examples/Pima/contributions2.png
inst/shiny-examples/Pima/outcomes.png
inst/shiny-examples/Pima/ccchart.png
inst/shiny-examples/Pima/cchart.png
inst/shiny-examples/Pima/corrplot.png
inst/shiny-examples/Pima/ff.png
NAMESPACE
R
R/patientchartcode.R R/colplotcode.R R/cumpatientchartcode.R R/svm_code.R R/glmcoxphcode.R R/APPcode.R R/multinomLRcode.R R/generalcode.R
MD5
DESCRIPTION
man
man/HTMLsummary.Rd man/plotperf.Rd man/cchart.Rd man/preplotperf.Rd man/runVRPMexample.Rd man/colplot.Rd man/ccchart.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.