VRPM: Visualizing Risk Prediction Models

This is a package to visualize risk prediction models. For each predictor, a color bar represents the contribution to the linear predictor or latent variable. A conversion from the linear predictor to the estimated risk or survival is also given. (Cumulative) contribution charts enable to visualize how the estimated risk for one particular observation is obtained by the model. Several options allow to choose different color maps, and to select the zero level of the contributions. The package is able to deal with 'glm', 'coxph', 'mfp', 'multinom' and 'ksvm' objects. For 'ksvm' objects, the visualization is not always exact. Functions providing tools to indicate the accuracy of the approximation are provided in addition to the visualization.

AuthorVanya Van Belle
Date of publication2016-09-01 15:41:33
MaintainerVanya Van Belle <vanya.vanbelle@esat.kuleuven.be>
LicenseGPL-3
Version1.1

View on CRAN

Files in this package

VRPM
VRPM/inst
VRPM/inst/examples
VRPM/inst/examples/HTMLsummaryex.R
VRPM/inst/examples/plotperfex.R
VRPM/inst/examples/colplotex.R
VRPM/inst/examples/cchartex.R
VRPM/inst/examples/ccchartex.R
VRPM/inst/examples/Appex.R
VRPM/inst/NEWS
VRPM/inst/shiny-examples
VRPM/inst/shiny-examples/Iris
VRPM/inst/shiny-examples/Iris/ui.R
VRPM/inst/shiny-examples/Iris/server.R
VRPM/inst/shiny-examples/Iris/lps.png
VRPM/inst/shiny-examples/Iris/colplot.png
VRPM/inst/shiny-examples/Iris/www
VRPM/inst/shiny-examples/Iris/www/empty.png
VRPM/inst/shiny-examples/Iris/probs.png
VRPM/inst/shiny-examples/Iris/ROC.png
VRPM/inst/shiny-examples/Iris/links.png
VRPM/inst/shiny-examples/Iris/contributions2.png
VRPM/inst/shiny-examples/Iris/outcomes.png
VRPM/inst/shiny-examples/Iris/ccchart.png
VRPM/inst/shiny-examples/Iris/cchart.png
VRPM/inst/shiny-examples/Iris/corrplot.png
VRPM/inst/shiny-examples/Iris/ff.png
VRPM/inst/shiny-examples/IntermittentClaudication
VRPM/inst/shiny-examples/IntermittentClaudication/ui.R
VRPM/inst/shiny-examples/IntermittentClaudication/server.R
VRPM/inst/shiny-examples/IntermittentClaudication/colplot.png
VRPM/inst/shiny-examples/IntermittentClaudication/www
VRPM/inst/shiny-examples/IntermittentClaudication/www/empty.png
VRPM/inst/shiny-examples/IntermittentClaudication/helpers.R
VRPM/inst/shiny-examples/IntermittentClaudication/ccchart.png
VRPM/inst/shiny-examples/IntermittentClaudication/cchart.png
VRPM/inst/shiny-examples/xsnz
VRPM/inst/shiny-examples/xsnz/ui.R
VRPM/inst/shiny-examples/xsnz/server.R
VRPM/inst/shiny-examples/xsnz/ccchartp_widowed_ccchart.png
VRPM/inst/shiny-examples/xsnz/colplotp_married.png
VRPM/inst/shiny-examples/xsnz/www
VRPM/inst/shiny-examples/xsnz/www/empty.png
VRPM/inst/shiny-examples/xsnz/colplot_patientsummary.png
VRPM/inst/shiny-examples/xsnz/ccchart_divorced_ccchart.png
VRPM/inst/shiny-examples/xsnz/colplotp_married_wing.png
VRPM/inst/shiny-examples/xsnz/cchart_divorced_cchart.png
VRPM/inst/shiny-examples/xsnz/colplotp_divorced.png
VRPM/inst/shiny-examples/xsnz/colplotp_single.png
VRPM/inst/shiny-examples/xsnz/ccchartp_divorced_ccchart.png
VRPM/inst/shiny-examples/xsnz/colplot_widowed.png
VRPM/inst/shiny-examples/xsnz/colplotp_widowed.png
VRPM/inst/shiny-examples/xsnz/colplot_divorced.png
VRPM/inst/shiny-examples/xsnz/colplot_patientsummary2.png
VRPM/inst/shiny-examples/xsnz/ccchart_widowed_ccchart.png
VRPM/inst/shiny-examples/xsnz/cchart_married_cchart.png
VRPM/inst/shiny-examples/xsnz/cchartp_divorced_cchart.png
VRPM/inst/shiny-examples/xsnz/ccchartp_married_ccchart.png
VRPM/inst/shiny-examples/xsnz/cchartp_single_cchart.png
VRPM/inst/shiny-examples/xsnz/ccchartp_single_ccchart.png
VRPM/inst/shiny-examples/xsnz/cchartp_widowed_cchart.png
VRPM/inst/shiny-examples/xsnz/cchart_widowed_cchart.png
VRPM/inst/shiny-examples/xsnz/colplotp_divorced_wing.png
VRPM/inst/shiny-examples/xsnz/ccchart_married_ccchart.png
VRPM/inst/shiny-examples/xsnz/cchartp_married_cchart.png
VRPM/inst/shiny-examples/xsnz/colplot_married.png
VRPM/inst/shiny-examples/xsnz/colplotp_widowed_wing.png
VRPM/inst/shiny-examples/Pima
VRPM/inst/shiny-examples/Pima/ui.R
VRPM/inst/shiny-examples/Pima/server.R
VRPM/inst/shiny-examples/Pima/lps.png
VRPM/inst/shiny-examples/Pima/colplot.png
VRPM/inst/shiny-examples/Pima/www
VRPM/inst/shiny-examples/Pima/www/empty.png
VRPM/inst/shiny-examples/Pima/probs.png
VRPM/inst/shiny-examples/Pima/colplot_B.png
VRPM/inst/shiny-examples/Pima/ROC.png
VRPM/inst/shiny-examples/Pima/links.png
VRPM/inst/shiny-examples/Pima/contributions2.png
VRPM/inst/shiny-examples/Pima/outcomes.png
VRPM/inst/shiny-examples/Pima/ccchart.png
VRPM/inst/shiny-examples/Pima/cchart.png
VRPM/inst/shiny-examples/Pima/corrplot.png
VRPM/inst/shiny-examples/Pima/ff.png
VRPM/NAMESPACE
VRPM/R
VRPM/R/patientchartcode.R VRPM/R/colplotcode.R VRPM/R/cumpatientchartcode.R VRPM/R/svm_code.R VRPM/R/glmcoxphcode.R VRPM/R/APPcode.R VRPM/R/multinomLRcode.R VRPM/R/generalcode.R
VRPM/MD5
VRPM/DESCRIPTION
VRPM/man
VRPM/man/HTMLsummary.Rd VRPM/man/plotperf.Rd VRPM/man/cchart.Rd VRPM/man/preplotperf.Rd VRPM/man/runVRPMexample.Rd VRPM/man/colplot.Rd VRPM/man/ccchart.Rd

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