Ecotype: Ecotype

In WallomicsData: Datasets for Multi-Omics Integration in a Plant Abiotic Stress Context

Ecotype

Description

The Ecotype factor identifies the genotype specifically designed for a given ecosystem of the A. thaliana from which the studied sample comes from. We have a population of reference as well as 4 newly-described Pyrenean populations, namely:

• Columbia, denoted Col (originating from Poland, acts as the reference ecotype)

• Grip, denoted Grip

• Herran, denoted Hern

• L’Hospitalet-près-l’Andorre, denoted Hosp

• Chapelle Saint Roch, denoted Roch

Usage

data("Ecotype")

Format

A factor with 5 levels of A. thaliana genotypes.

Source

doi: 10.3390/cells9102249

Examples

# Load the data
data("Ecotype")

# Count how many samples are in each group
table(Ecotype)

WallomicsData documentation built on April 15, 2022, 5:06 p.m.