Metadata: Metadata

In WallomicsData: Datasets for Multi-Omics Integration in a Plant Abiotic Stress Context

Metadata

Description

Bioinformatics Annotation and description, using the WallProtDB database, of all the Cell Wall Proteins (CWPs) identified on rosettes and floral stems of five A. thaliana genotypes at two growth temperatures. See Ecotype and Temperature for additionnal information.

Usage

data("Metadata")

Format

A data frame with 474 rows and 4 variables:

• Acc_number: GenBank accession number (gene name)

• Functional_classes: Functional classes of the CWPs

• Protein_families: Protein families of the CWPs

• Putative_functions: Putative functions of the CWPs

Source

doi: 10.3390/cells9102249

Examples

# Load the dataset
data("Metadata")

# Look at the dataset's dimensions
dim(Metadata)
head(Metadata)

# How many functional classes ?
table(Metadata$Functional_classes)

# How many protein families ?
table(Metadata$Protein_families)

WallomicsData documentation built on April 15, 2022, 5:06 p.m.