ZeBook: ZeBook Working with dynamic models for agriculture and environment

R package accompanying the book Working with dynamic models for agriculture and environment, by Daniel Wallach (INRA), David Makowski (INRA), James W. Jones (U.of Florida), Francois Brun (ACTA), in preparation for June 2013.

AuthorFrancois Brun (ACTA), David Makowski (INRA), Daniel Wallach (INRA), James W. Jones (U.of Florida).
Date of publication2013-06-18 00:10:49
MaintainerFrancois Brun <francois.brun@acta.asso.fr>
LicenseLGPL-3
Version0.5

View on CRAN

Man pages

AICf: Calculate AIC, Akaike's Information Criterion

carbonsoil.model: The CarbonSoil model - calculate daily values over designated...

carbonsoil.update: The CarbonSoil model - calculate change in soil carbon for...

carcass_data: Data of growth of beef cattle for Carcass model

carcass.define.param: Define values of the parameters for the Carcass model

carcass.EMI.model: The Carcass (growth of beef cattle) model with energy as...

carcass.EMI.model2: The Carcass model function for use with carcass.EMI.simule

carcass.EMI.multi: Wrapper function to run Carcass model on several animals with...

carcass.EMI.simule: Wrapper function to the Carcass model for multiple sets of...

carcass.model: The Carcass (growth of beef cattle) model

chicks_data: Data of growth of chicks

cotton.model: The Cotton model (dynamic for numbers of Cotton fruiting...

epirice.define.param: Define values of the parameters for the Epirice model

epirice.model: The Epirice model (Disease model for rice)

epirice.multi.simule: Wrapper function to run Epirice multiple times (for multiple...

epirice.weather: Read weather data for Epirice (southern Asia weather)

evaluation.criteria: Calcule multiple goodness-of-fit criteria

exponential.model: The Exponential growth model of dynamic of population

exponential.model.bis: The Exponential growth model of dynamic of population -...

exponential.model.ie: The Exponential growth model of dynamic of population - with...

goodness.of.fit: Calcule multiple goodness-of-fit criteria

lactation.calf.model: The Lactation model

lactation.calf.model2: The Lactation model for use with lactation.calf.simule

lactation.calf.simule: Wrapper function to run the Lactation model for multiple sets...

lactation.define.param: Define values of the parameters for the Lactation model

lactation.model.machine: The Lactation model with milking machine

lactation.model.machine2: The Lactation model for use with lactation.machine.simule

magarey.define.param: Define values of the parameters for the Magarey model

magarey.model: The Magarey model

magarey.model2: The Magarey model, taking a vector of parameters as argument

magarey.simule: Wrapper function to run the Magarey model multiple times (for...

maize_cir.model: The Maize model with additional state variable CumInt

maize_cir_rue_ear.model: The Maize model with temperature dependent RUE, CumInt and...

maize_cir_rue.model: The Maize model with temperature dependent RUE and CumInt

maize.data_EuropeEU: maize biomass and leaf area data

maize.define.param: Define values of the parameters for the Maize model

maize.model: The basic Maize model.

maize.model2: The basic Maize model for use with maize.simule

maize.multisy: Wrapping function to run maize model on several site-years

maize.multisy240: Wrapper function to run Maize model for multiple sets of...

maize.RUEtemp: Calculate effect of temperature on RUE for Maize

maize.simule: Wrapper function to run Maize model for multiple sets of...

maize.simule240: Wrapper function to run Maize model multiple times for...

maize.simule_multisy240: Wrapper function to run Maize model for multiple sets of...

maize.weather: Read weather data for the Maize model

param.rtriangle: Generate a random plan as a data frame. Columns are...

param.runif: Generate a random plan as a data frame. Columns are...

population.age.matrix.model: The PopulationAge model (Population Dynamics with Age...

population.age.model: The PopulationAge model (Population Dynamics with Age...

population.age.model.ode: The PopulationAge model (Population Dynamics with Age...

predator.prey.model: The PredatorPrey model (Predator-Prey Lotka-Volterra with...

q.arg.fast.runif: Build the q.arg argument for the FAST function (sensitivity...

seedweight.data: Wheat grain weight measurements after anthesis

seedweight.model: The SeedWeight model

Sunflower_Phomopsis: Phomopsis stem canker observations for Sunflower

threshold.measures: TO COMPLETE Computation of threshold.measures

verhulst.model: The Verhulst (logistic) model - calculate daily values over...

verhulst.update: The Verhulst (logistic) model - calculate change for one day

watbal.define.param: Define values of the parameters for the WaterBalance model

watbal.model: WaterBalance model - calculate soil water over designated...

watbal.model.arid: WaterBalance model - Variant with another order of...

watbal.simobsdata: Soil water content measurements and associated simulations...

watbal.update: WaterBalance model - calculate change in soil water for one...

watbal.weather: Read weather data for the WaterBalance model (West of France...

weather_EuropeEU: Weather serie for Europe EU from NASA POWER agroclimatology

weather_FranceWest: Weather series for western France from NASA POWER...

weather_SouthAsia: Weather series for southern Asia from NASA POWER...

weed.define.param: Define parameter values of the Weed model

weed.model: The Weed model - calculate daily values over designated time...

weed.simule: Wrapper function to run the Weed model multiple times (for...

weed.update: The Weed model - calculate change for one year

Wheat_GPC: Grain Protein Contents in Wheat Grains

WheatYieldGreece: National Wheat Yield evolution for Greece from FAO

ZeBook-package: ZeBook : Working with dynamic models for agriculture and...

Functions

AICf Man page
carbonsoil.model Man page
carbonsoil.update Man page
carcass_data Man page
carcass.define.param Man page
carcass.EMI.model Man page
carcass.EMI.model2 Man page
carcass.EMI.multi Man page
carcass.EMI.simule Man page
carcass.model Man page
chicks_data Man page
cotton.model Man page
epirice.define.param Man page
epirice.model Man page
epirice.multi.simule Man page
epirice.weather Man page
evaluation.criteria Man page
exponential.model Man page
exponential.model.bis Man page
exponential.model.ie Man page
goodness.of.fit Man page
lactation.calf.model Man page
lactation.calf.model2 Man page
lactation.calf.simule Man page
lactation.define.param Man page
lactation.model.machine Man page
lactation.model.machine2 Man page
magarey.define.param Man page
magarey.model Man page
magarey.model2 Man page
magarey.simule Man page
maize_cir.model Man page
maize_cir_rue_ear.model Man page
maize_cir_rue.model Man page
maize.data_EuropeEU Man page
maize.define.param Man page
maize.model Man page
maize.model2 Man page
maize.multisy Man page
maize.multisy240 Man page
maize.RUEtemp Man page
maize.simule Man page
maize.simule240 Man page
maize.simule_multisy240 Man page
maize.weather Man page
param.rtriangle Man page
param.runif Man page
population.age.matrix.model Man page
population.age.model Man page
population.age.model.ode Man page
predator.prey.model Man page
q.arg.fast.runif Man page
seedweight.data Man page
seedweight.model Man page
Sunflower_Phomopsis Man page
threshold.measures Man page
verhulst.model Man page
verhulst.update Man page
watbal.define.param Man page
watbal.model Man page
watbal.model.arid Man page
watbal.simobsdata Man page
watbal.update Man page
watbal.weather Man page
weather_EuropeEU Man page
weather_FranceWest Man page
weather_SouthAsia Man page
weed.define.param Man page
weed.model Man page
weed.simule Man page
weed.update Man page
Wheat_GPC Man page
WheatYieldGreece Man page
ZeBook Man page
ZeBook-package Man page

Files

ZeBook
ZeBook/MD5
ZeBook/man
ZeBook/man/weed.update.Rd ZeBook/man/weed.simule.Rd ZeBook/man/weed.model.Rd ZeBook/man/weed.define.param.Rd ZeBook/man/weather_SouthAsia.Rd ZeBook/man/weather_FranceWest.Rd ZeBook/man/weather_EuropeEU.Rd ZeBook/man/watbal.weather.Rd ZeBook/man/watbal.update.Rd ZeBook/man/watbal.simobsdata.Rd ZeBook/man/watbal.model.arid.Rd ZeBook/man/watbal.model.Rd ZeBook/man/watbal.define.param.Rd ZeBook/man/verhulst.update.Rd ZeBook/man/verhulst.model.Rd ZeBook/man/threshold.measures.Rd ZeBook/man/seedweight.model.Rd ZeBook/man/seedweight.data.Rd ZeBook/man/q.arg.fast.runif.Rd ZeBook/man/predator.prey.model.Rd ZeBook/man/population.age.model.ode.Rd ZeBook/man/population.age.model.Rd ZeBook/man/population.age.matrix.model.Rd ZeBook/man/param.runif.Rd ZeBook/man/param.rtriangle.Rd ZeBook/man/maize_cir_rue_ear.model.Rd ZeBook/man/maize_cir_rue.model.Rd ZeBook/man/maize_cir.model.Rd ZeBook/man/maize.weather.Rd ZeBook/man/maize.simule_multisy240.Rd ZeBook/man/maize.simule240.Rd ZeBook/man/maize.simule.Rd ZeBook/man/maize.multisy240.Rd ZeBook/man/maize.multisy.Rd ZeBook/man/maize.model2.Rd ZeBook/man/maize.model.Rd ZeBook/man/maize.define.param.Rd ZeBook/man/maize.data_EuropeEU.Rd ZeBook/man/maize.RUEtemp.Rd ZeBook/man/magarey.simule.Rd ZeBook/man/magarey.model2.Rd ZeBook/man/magarey.model.Rd ZeBook/man/magarey.define.param.Rd ZeBook/man/lactation.model.machine2.Rd ZeBook/man/lactation.model.machine.Rd ZeBook/man/lactation.define.param.Rd ZeBook/man/lactation.calf.simule.Rd ZeBook/man/lactation.calf.model2.Rd ZeBook/man/lactation.calf.model.Rd ZeBook/man/goodness.of.fit.Rd ZeBook/man/exponential.model.ie.Rd ZeBook/man/exponential.model.bis.Rd ZeBook/man/exponential.model.Rd ZeBook/man/evaluation.criteria.Rd ZeBook/man/epirice.weather.Rd ZeBook/man/epirice.multi.simule.Rd ZeBook/man/epirice.model.Rd ZeBook/man/epirice.define.param.Rd ZeBook/man/cotton.model.Rd ZeBook/man/chicks_data.Rd ZeBook/man/carcass_data.Rd ZeBook/man/carcass.model.Rd ZeBook/man/carcass.define.param.Rd ZeBook/man/carcass.EMI.simule.Rd ZeBook/man/carcass.EMI.multi.Rd ZeBook/man/carcass.EMI.model2.Rd ZeBook/man/carcass.EMI.model.Rd ZeBook/man/carbonsoil.update.Rd ZeBook/man/carbonsoil.model.Rd ZeBook/man/ZeBook-package.Rd ZeBook/man/Wheat_GPC.Rd ZeBook/man/WheatYieldGreece.Rd ZeBook/man/Sunflower_Phomopsis.Rd ZeBook/man/AICf.Rd
ZeBook/demo
ZeBook/demo/ch10maizeS8DataAssimilation.r
ZeBook/demo/ch10maizeB7Bayes_functionsMH.r
ZeBook/demo/ch10maizeB7BayesUncertainty.r
ZeBook/demo/ch10maizeB5bBayesEstimAllparam.r
ZeBook/demo/ch10maizeB5aBayesEstimRUE.r
ZeBook/demo/ch10maize7scenario.r
ZeBook/demo/ch10maize6bMSEP_ConcL.r
ZeBook/demo/ch10maize6aMSEP_OLS.r
ZeBook/demo/ch10maize5dparameterConcL_log.r
ZeBook/demo/ch10maize5cparameterConcL.r
ZeBook/demo/ch10maize5bparameterOLS_simplex.r
ZeBook/demo/ch10maize5aparameterOLS_gradient.r
ZeBook/demo/ch10maize4sensitivity.r
ZeBook/demo/ch10maize3uncertainty.r
ZeBook/demo/ch10maize2evaluation.r
ZeBook/demo/ch10maize1data.r
ZeBook/demo/ch08DLM_watbal.r
ZeBook/demo/ch08DLM_WheatYieldGreece.r
ZeBook/demo/ch08DLM_CarbonSoil.r
ZeBook/demo/ch07Bayes_Carbon.r
ZeBook/demo/ch05USA_Weed.r
ZeBook/demo/ch05USA_Magarey.r
ZeBook/demo/ch05USA_Lactation.r
ZeBook/demo/ch05USA_Carcass.r
ZeBook/demo/ch04Simulation.watbal.r
ZeBook/demo/ch04Simulation.prey.predator.r
ZeBook/demo/ch04Simulation.population.age.r
ZeBook/demo/ch04Simulation.maize.r
ZeBook/demo/ch04Simulation.exponential.r
ZeBook/demo/ch04Simulation.epirice.r
ZeBook/demo/ch03R_maize_parallel.r
ZeBook/demo/00Index
ZeBook/data
ZeBook/data/weather_SouthAsia.rda
ZeBook/data/weather_FranceWest.rda
ZeBook/data/weather_EuropeEU.rda
ZeBook/data/watbal.simobsdata.rda
ZeBook/data/seedweight.data.rda
ZeBook/data/maize.data_EuropeEU.rda
ZeBook/data/datalist
ZeBook/data/chicks_data.rda
ZeBook/data/carcass_data.rda
ZeBook/data/Wheat_GPC.rda
ZeBook/data/WheatYieldGreece.rda
ZeBook/data/Sunflower_Phomopsis.rda
ZeBook/R
ZeBook/R/weed.model.r
ZeBook/R/weather_SouthAsia_data.r
ZeBook/R/weather_FranceWest_data.r
ZeBook/R/weather_EuropeEU_data.r
ZeBook/R/watbal.simobsdata.r
ZeBook/R/watbal.model.r
ZeBook/R/verhulst.model.r
ZeBook/R/seedweight.model.r
ZeBook/R/seedweight.data_data.r
ZeBook/R/sample.r
ZeBook/R/prey.predator.model.r
ZeBook/R/population.age.model.r
ZeBook/R/maize.model.r
ZeBook/R/maize.data_EuropeEU.r
ZeBook/R/magarey.model.r
ZeBook/R/lactation.machine.model.r
ZeBook/R/lactation.calf.model.r
ZeBook/R/goodness.of.fit.r
ZeBook/R/exponential.model.r
ZeBook/R/evaluation.criteria.r
ZeBook/R/epirice.model.r
ZeBook/R/cotton.model.r
ZeBook/R/chicks_data.r
ZeBook/R/carcass_data.r
ZeBook/R/carcass.model.r
ZeBook/R/carcass.EMI.model.r
ZeBook/R/carbon.model.r
ZeBook/R/ZeBook.r
ZeBook/R/Wheat_GPC_data.r
ZeBook/R/WheatYieldGreece_data.r
ZeBook/R/Sunflower_Phomopsis_data.r
ZeBook/R/AIC.r
ZeBook/NAMESPACE
ZeBook/DESCRIPTION

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.