ZeBook: ZeBook Working with dynamic models for agriculture and environment
Version 0.5

R package accompanying the book Working with dynamic models for agriculture and environment, by Daniel Wallach (INRA), David Makowski (INRA), James W. Jones (U.of Florida), Francois Brun (ACTA), in preparation for June 2013.

AuthorFrancois Brun (ACTA), David Makowski (INRA), Daniel Wallach (INRA), James W. Jones (U.of Florida).
Date of publication2013-06-18 00:10:49
MaintainerFrancois Brun <francois.brun@acta.asso.fr>
LicenseLGPL-3
Version0.5
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ZeBook")

Getting started

Package overview

Popular man pages

AICf: Calculate AIC, Akaike's Information Criterion
carbonsoil.update: The CarbonSoil model - calculate change in soil carbon for...
carcass.EMI.multi: Wrapper function to run Carcass model on several animals with...
epirice.model: The Epirice model (Disease model for rice)
lactation.calf.model: The Lactation model
lactation.model.machine: The Lactation model with milking machine
ZeBook-package: ZeBook : Working with dynamic models for agriculture and...
See all...

All man pages Function index File listing

Man pages

AICf: Calculate AIC, Akaike's Information Criterion
carbonsoil.model: The CarbonSoil model - calculate daily values over designated...
carbonsoil.update: The CarbonSoil model - calculate change in soil carbon for...
carcass_data: Data of growth of beef cattle for Carcass model
carcass.define.param: Define values of the parameters for the Carcass model
carcass.EMI.model: The Carcass (growth of beef cattle) model with energy as...
carcass.EMI.model2: The Carcass model function for use with carcass.EMI.simule
carcass.EMI.multi: Wrapper function to run Carcass model on several animals with...
carcass.EMI.simule: Wrapper function to the Carcass model for multiple sets of...
carcass.model: The Carcass (growth of beef cattle) model
chicks_data: Data of growth of chicks
cotton.model: The Cotton model (dynamic for numbers of Cotton fruiting...
epirice.define.param: Define values of the parameters for the Epirice model
epirice.model: The Epirice model (Disease model for rice)
epirice.multi.simule: Wrapper function to run Epirice multiple times (for multiple...
epirice.weather: Read weather data for Epirice (southern Asia weather)
evaluation.criteria: Calcule multiple goodness-of-fit criteria
exponential.model: The Exponential growth model of dynamic of population
exponential.model.bis: The Exponential growth model of dynamic of population -...
exponential.model.ie: The Exponential growth model of dynamic of population - with...
goodness.of.fit: Calcule multiple goodness-of-fit criteria
lactation.calf.model: The Lactation model
lactation.calf.model2: The Lactation model for use with lactation.calf.simule
lactation.calf.simule: Wrapper function to run the Lactation model for multiple sets...
lactation.define.param: Define values of the parameters for the Lactation model
lactation.model.machine: The Lactation model with milking machine
lactation.model.machine2: The Lactation model for use with lactation.machine.simule
magarey.define.param: Define values of the parameters for the Magarey model
magarey.model: The Magarey model
magarey.model2: The Magarey model, taking a vector of parameters as argument
magarey.simule: Wrapper function to run the Magarey model multiple times (for...
maize_cir.model: The Maize model with additional state variable CumInt
maize_cir_rue_ear.model: The Maize model with temperature dependent RUE, CumInt and...
maize_cir_rue.model: The Maize model with temperature dependent RUE and CumInt
maize.data_EuropeEU: maize biomass and leaf area data
maize.define.param: Define values of the parameters for the Maize model
maize.model: The basic Maize model.
maize.model2: The basic Maize model for use with maize.simule
maize.multisy: Wrapping function to run maize model on several site-years
maize.multisy240: Wrapper function to run Maize model for multiple sets of...
maize.RUEtemp: Calculate effect of temperature on RUE for Maize
maize.simule: Wrapper function to run Maize model for multiple sets of...
maize.simule240: Wrapper function to run Maize model multiple times for...
maize.simule_multisy240: Wrapper function to run Maize model for multiple sets of...
maize.weather: Read weather data for the Maize model
param.rtriangle: Generate a random plan as a data frame. Columns are...
param.runif: Generate a random plan as a data frame. Columns are...
population.age.matrix.model: The PopulationAge model (Population Dynamics with Age...
population.age.model: The PopulationAge model (Population Dynamics with Age...
population.age.model.ode: The PopulationAge model (Population Dynamics with Age...
predator.prey.model: The PredatorPrey model (Predator-Prey Lotka-Volterra with...
q.arg.fast.runif: Build the q.arg argument for the FAST function (sensitivity...
seedweight.data: Wheat grain weight measurements after anthesis
seedweight.model: The SeedWeight model
Sunflower_Phomopsis: Phomopsis stem canker observations for Sunflower
threshold.measures: TO COMPLETE Computation of threshold.measures
verhulst.model: The Verhulst (logistic) model - calculate daily values over...
verhulst.update: The Verhulst (logistic) model - calculate change for one day
watbal.define.param: Define values of the parameters for the WaterBalance model
watbal.model: WaterBalance model - calculate soil water over designated...
watbal.model.arid: WaterBalance model - Variant with another order of...
watbal.simobsdata: Soil water content measurements and associated simulations...
watbal.update: WaterBalance model - calculate change in soil water for one...
watbal.weather: Read weather data for the WaterBalance model (West of France...
weather_EuropeEU: Weather serie for Europe EU from NASA POWER agroclimatology
weather_FranceWest: Weather series for western France from NASA POWER...
weather_SouthAsia: Weather series for southern Asia from NASA POWER...
weed.define.param: Define parameter values of the Weed model
weed.model: The Weed model - calculate daily values over designated time...
weed.simule: Wrapper function to run the Weed model multiple times (for...
weed.update: The Weed model - calculate change for one year
Wheat_GPC: Grain Protein Contents in Wheat Grains
WheatYieldGreece: National Wheat Yield evolution for Greece from FAO
ZeBook-package: ZeBook : Working with dynamic models for agriculture and...

Functions

AICf Man page Source code
Sunflower_Phomopsis Man page
WheatYieldGreece Man page
Wheat_GPC Man page
ZeBook Man page
ZeBook-package Man page
carbonsoil.model Man page Source code
carbonsoil.update Man page Source code
carcass.EMI.model Man page Source code
carcass.EMI.model2 Man page Source code
carcass.EMI.multi Man page Source code
carcass.EMI.simule Man page Source code
carcass.define.param Man page Source code
carcass.model Man page Source code
carcass_data Man page
chicks_data Man page
cotton.model Man page Source code
epirice.define.param Man page Source code
epirice.model Man page Source code
epirice.multi.simule Man page Source code
epirice.weather Man page Source code
evaluation.criteria Man page Source code
exponential.model Man page Source code
exponential.model.bis Man page Source code
exponential.model.ie Man page Source code
goodness.of.fit Man page Source code
lactation.calf.model Man page Source code
lactation.calf.model2 Man page Source code
lactation.calf.simule Man page Source code
lactation.define.param Man page Source code
lactation.model.machine Man page Source code
lactation.model.machine2 Man page Source code
magarey.define.param Man page Source code
magarey.model Man page Source code
magarey.model2 Man page Source code
magarey.simule Man page Source code
maize.RUEtemp Man page Source code
maize.data_EuropeEU Man page
maize.define.param Man page Source code
maize.model Man page Source code
maize.model2 Man page Source code
maize.multisy Man page Source code
maize.multisy240 Man page Source code
maize.simule Man page Source code
maize.simule240 Man page Source code
maize.simule_multisy240 Man page Source code
maize.weather Man page Source code
maize_cir.model Man page Source code
maize_cir_rue.model Man page Source code
maize_cir_rue_ear.model Man page Source code
param.rtriangle Man page Source code
param.runif Man page Source code
population.age.matrix.model Man page Source code
population.age.model Man page Source code
population.age.model.ode Man page Source code
predator.prey.model Man page Source code
q.arg.fast.runif Man page Source code
seedweight.data Man page
seedweight.model Man page Source code
threshold.measures Man page Source code
verhulst.model Man page Source code
verhulst.update Man page Source code
watbal.define.param Man page Source code
watbal.model Man page Source code
watbal.model.arid Man page Source code
watbal.simobsdata Man page
watbal.update Man page Source code
watbal.weather Man page Source code
weather_EuropeEU Man page
weather_FranceWest Man page
weather_SouthAsia Man page
weed.define.param Man page Source code
weed.model Man page Source code
weed.simule Man page Source code
weed.update Man page Source code

Files

MD5
man
man/weed.update.Rd
man/weed.simule.Rd
man/weed.model.Rd
man/weed.define.param.Rd
man/weather_SouthAsia.Rd
man/weather_FranceWest.Rd
man/weather_EuropeEU.Rd
man/watbal.weather.Rd
man/watbal.update.Rd
man/watbal.simobsdata.Rd
man/watbal.model.arid.Rd
man/watbal.model.Rd
man/watbal.define.param.Rd
man/verhulst.update.Rd
man/verhulst.model.Rd
man/threshold.measures.Rd
man/seedweight.model.Rd
man/seedweight.data.Rd
man/q.arg.fast.runif.Rd
man/predator.prey.model.Rd
man/population.age.model.ode.Rd
man/population.age.model.Rd
man/population.age.matrix.model.Rd
man/param.runif.Rd
man/param.rtriangle.Rd
man/maize_cir_rue_ear.model.Rd
man/maize_cir_rue.model.Rd
man/maize_cir.model.Rd
man/maize.weather.Rd
man/maize.simule_multisy240.Rd
man/maize.simule240.Rd
man/maize.simule.Rd
man/maize.multisy240.Rd
man/maize.multisy.Rd
man/maize.model2.Rd
man/maize.model.Rd
man/maize.define.param.Rd
man/maize.data_EuropeEU.Rd
man/maize.RUEtemp.Rd
man/magarey.simule.Rd
man/magarey.model2.Rd
man/magarey.model.Rd
man/magarey.define.param.Rd
man/lactation.model.machine2.Rd
man/lactation.model.machine.Rd
man/lactation.define.param.Rd
man/lactation.calf.simule.Rd
man/lactation.calf.model2.Rd
man/lactation.calf.model.Rd
man/goodness.of.fit.Rd
man/exponential.model.ie.Rd
man/exponential.model.bis.Rd
man/exponential.model.Rd
man/evaluation.criteria.Rd
man/epirice.weather.Rd
man/epirice.multi.simule.Rd
man/epirice.model.Rd
man/epirice.define.param.Rd
man/cotton.model.Rd
man/chicks_data.Rd
man/carcass_data.Rd
man/carcass.model.Rd
man/carcass.define.param.Rd
man/carcass.EMI.simule.Rd
man/carcass.EMI.multi.Rd
man/carcass.EMI.model2.Rd
man/carcass.EMI.model.Rd
man/carbonsoil.update.Rd
man/carbonsoil.model.Rd
man/ZeBook-package.Rd
man/Wheat_GPC.Rd
man/WheatYieldGreece.Rd
man/Sunflower_Phomopsis.Rd
man/AICf.Rd
demo
demo/ch10maizeS8DataAssimilation.r
demo/ch10maizeB7Bayes_functionsMH.r
demo/ch10maizeB7BayesUncertainty.r
demo/ch10maizeB5bBayesEstimAllparam.r
demo/ch10maizeB5aBayesEstimRUE.r
demo/ch10maize7scenario.r
demo/ch10maize6bMSEP_ConcL.r
demo/ch10maize6aMSEP_OLS.r
demo/ch10maize5dparameterConcL_log.r
demo/ch10maize5cparameterConcL.r
demo/ch10maize5bparameterOLS_simplex.r
demo/ch10maize5aparameterOLS_gradient.r
demo/ch10maize4sensitivity.r
demo/ch10maize3uncertainty.r
demo/ch10maize2evaluation.r
demo/ch10maize1data.r
demo/ch08DLM_watbal.r
demo/ch08DLM_WheatYieldGreece.r
demo/ch08DLM_CarbonSoil.r
demo/ch07Bayes_Carbon.r
demo/ch05USA_Weed.r
demo/ch05USA_Magarey.r
demo/ch05USA_Lactation.r
demo/ch05USA_Carcass.r
demo/ch04Simulation.watbal.r
demo/ch04Simulation.prey.predator.r
demo/ch04Simulation.population.age.r
demo/ch04Simulation.maize.r
demo/ch04Simulation.exponential.r
demo/ch04Simulation.epirice.r
demo/ch03R_maize_parallel.r
demo/00Index
data
data/weather_SouthAsia.rda
data/weather_FranceWest.rda
data/weather_EuropeEU.rda
data/watbal.simobsdata.rda
data/seedweight.data.rda
data/maize.data_EuropeEU.rda
data/datalist
data/chicks_data.rda
data/carcass_data.rda
data/Wheat_GPC.rda
data/WheatYieldGreece.rda
data/Sunflower_Phomopsis.rda
R
R/weed.model.r
R/weather_SouthAsia_data.r
R/weather_FranceWest_data.r
R/weather_EuropeEU_data.r
R/watbal.simobsdata.r
R/watbal.model.r
R/verhulst.model.r
R/seedweight.model.r
R/seedweight.data_data.r
R/sample.r
R/prey.predator.model.r
R/population.age.model.r
R/maize.model.r
R/maize.data_EuropeEU.r
R/magarey.model.r
R/lactation.machine.model.r
R/lactation.calf.model.r
R/goodness.of.fit.r
R/exponential.model.r
R/evaluation.criteria.r
R/epirice.model.r
R/cotton.model.r
R/chicks_data.r
R/carcass_data.r
R/carcass.model.r
R/carcass.EMI.model.r
R/carbon.model.r
R/ZeBook.r
R/Wheat_GPC_data.r
R/WheatYieldGreece_data.r
R/Sunflower_Phomopsis_data.r
R/AIC.r
NAMESPACE
DESCRIPTION
ZeBook documentation built on May 19, 2017, 2:34 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.