ZeBook: ZeBook Working with dynamic models for agriculture and environment

R package accompanying the book Working with dynamic models for agriculture and environment, by Daniel Wallach (INRA), David Makowski (INRA), James W. Jones (U.of Florida), Francois Brun (ACTA), in preparation for June 2013.

AuthorFrancois Brun (ACTA), David Makowski (INRA), Daniel Wallach (INRA), James W. Jones (U.of Florida).
Date of publication2013-06-18 00:10:49
MaintainerFrancois Brun <francois.brun@acta.asso.fr>
LicenseLGPL-3
Version0.5

View on CRAN

Man pages

AICf: Calculate AIC, Akaike's Information Criterion

carbonsoil.model: The CarbonSoil model - calculate daily values over designated...

carbonsoil.update: The CarbonSoil model - calculate change in soil carbon for...

carcass_data: Data of growth of beef cattle for Carcass model

carcass.define.param: Define values of the parameters for the Carcass model

carcass.EMI.model: The Carcass (growth of beef cattle) model with energy as...

carcass.EMI.model2: The Carcass model function for use with carcass.EMI.simule

carcass.EMI.multi: Wrapper function to run Carcass model on several animals with...

carcass.EMI.simule: Wrapper function to the Carcass model for multiple sets of...

carcass.model: The Carcass (growth of beef cattle) model

chicks_data: Data of growth of chicks

cotton.model: The Cotton model (dynamic for numbers of Cotton fruiting...

epirice.define.param: Define values of the parameters for the Epirice model

epirice.model: The Epirice model (Disease model for rice)

epirice.multi.simule: Wrapper function to run Epirice multiple times (for multiple...

epirice.weather: Read weather data for Epirice (southern Asia weather)

evaluation.criteria: Calcule multiple goodness-of-fit criteria

exponential.model: The Exponential growth model of dynamic of population

exponential.model.bis: The Exponential growth model of dynamic of population -...

exponential.model.ie: The Exponential growth model of dynamic of population - with...

goodness.of.fit: Calcule multiple goodness-of-fit criteria

lactation.calf.model: The Lactation model

lactation.calf.model2: The Lactation model for use with lactation.calf.simule

lactation.calf.simule: Wrapper function to run the Lactation model for multiple sets...

lactation.define.param: Define values of the parameters for the Lactation model

lactation.model.machine: The Lactation model with milking machine

lactation.model.machine2: The Lactation model for use with lactation.machine.simule

magarey.define.param: Define values of the parameters for the Magarey model

magarey.model: The Magarey model

magarey.model2: The Magarey model, taking a vector of parameters as argument

magarey.simule: Wrapper function to run the Magarey model multiple times (for...

maize_cir.model: The Maize model with additional state variable CumInt

maize_cir_rue_ear.model: The Maize model with temperature dependent RUE, CumInt and...

maize_cir_rue.model: The Maize model with temperature dependent RUE and CumInt

maize.data_EuropeEU: maize biomass and leaf area data

maize.define.param: Define values of the parameters for the Maize model

maize.model: The basic Maize model.

maize.model2: The basic Maize model for use with maize.simule

maize.multisy: Wrapping function to run maize model on several site-years

maize.multisy240: Wrapper function to run Maize model for multiple sets of...

maize.RUEtemp: Calculate effect of temperature on RUE for Maize

maize.simule: Wrapper function to run Maize model for multiple sets of...

maize.simule240: Wrapper function to run Maize model multiple times for...

maize.simule_multisy240: Wrapper function to run Maize model for multiple sets of...

maize.weather: Read weather data for the Maize model

param.rtriangle: Generate a random plan as a data frame. Columns are...

param.runif: Generate a random plan as a data frame. Columns are...

population.age.matrix.model: The PopulationAge model (Population Dynamics with Age...

population.age.model: The PopulationAge model (Population Dynamics with Age...

population.age.model.ode: The PopulationAge model (Population Dynamics with Age...

predator.prey.model: The PredatorPrey model (Predator-Prey Lotka-Volterra with...

q.arg.fast.runif: Build the q.arg argument for the FAST function (sensitivity...

seedweight.data: Wheat grain weight measurements after anthesis

seedweight.model: The SeedWeight model

Sunflower_Phomopsis: Phomopsis stem canker observations for Sunflower

threshold.measures: TO COMPLETE Computation of threshold.measures

verhulst.model: The Verhulst (logistic) model - calculate daily values over...

verhulst.update: The Verhulst (logistic) model - calculate change for one day

watbal.define.param: Define values of the parameters for the WaterBalance model

watbal.model: WaterBalance model - calculate soil water over designated...

watbal.model.arid: WaterBalance model - Variant with another order of...

watbal.simobsdata: Soil water content measurements and associated simulations...

watbal.update: WaterBalance model - calculate change in soil water for one...

watbal.weather: Read weather data for the WaterBalance model (West of France...

weather_EuropeEU: Weather serie for Europe EU from NASA POWER agroclimatology

weather_FranceWest: Weather series for western France from NASA POWER...

weather_SouthAsia: Weather series for southern Asia from NASA POWER...

weed.define.param: Define parameter values of the Weed model

weed.model: The Weed model - calculate daily values over designated time...

weed.simule: Wrapper function to run the Weed model multiple times (for...

weed.update: The Weed model - calculate change for one year

Wheat_GPC: Grain Protein Contents in Wheat Grains

WheatYieldGreece: National Wheat Yield evolution for Greece from FAO

ZeBook-package: ZeBook : Working with dynamic models for agriculture and...

Files in this package

ZeBook
ZeBook/MD5
ZeBook/man
ZeBook/man/weed.update.Rd ZeBook/man/weed.simule.Rd ZeBook/man/weed.model.Rd ZeBook/man/weed.define.param.Rd ZeBook/man/weather_SouthAsia.Rd ZeBook/man/weather_FranceWest.Rd ZeBook/man/weather_EuropeEU.Rd ZeBook/man/watbal.weather.Rd ZeBook/man/watbal.update.Rd ZeBook/man/watbal.simobsdata.Rd ZeBook/man/watbal.model.arid.Rd ZeBook/man/watbal.model.Rd ZeBook/man/watbal.define.param.Rd ZeBook/man/verhulst.update.Rd ZeBook/man/verhulst.model.Rd ZeBook/man/threshold.measures.Rd ZeBook/man/seedweight.model.Rd ZeBook/man/seedweight.data.Rd ZeBook/man/q.arg.fast.runif.Rd ZeBook/man/predator.prey.model.Rd ZeBook/man/population.age.model.ode.Rd ZeBook/man/population.age.model.Rd ZeBook/man/population.age.matrix.model.Rd ZeBook/man/param.runif.Rd ZeBook/man/param.rtriangle.Rd ZeBook/man/maize_cir_rue_ear.model.Rd ZeBook/man/maize_cir_rue.model.Rd ZeBook/man/maize_cir.model.Rd ZeBook/man/maize.weather.Rd ZeBook/man/maize.simule_multisy240.Rd ZeBook/man/maize.simule240.Rd ZeBook/man/maize.simule.Rd ZeBook/man/maize.multisy240.Rd ZeBook/man/maize.multisy.Rd ZeBook/man/maize.model2.Rd ZeBook/man/maize.model.Rd ZeBook/man/maize.define.param.Rd ZeBook/man/maize.data_EuropeEU.Rd ZeBook/man/maize.RUEtemp.Rd ZeBook/man/magarey.simule.Rd ZeBook/man/magarey.model2.Rd ZeBook/man/magarey.model.Rd ZeBook/man/magarey.define.param.Rd ZeBook/man/lactation.model.machine2.Rd ZeBook/man/lactation.model.machine.Rd ZeBook/man/lactation.define.param.Rd ZeBook/man/lactation.calf.simule.Rd ZeBook/man/lactation.calf.model2.Rd ZeBook/man/lactation.calf.model.Rd ZeBook/man/goodness.of.fit.Rd ZeBook/man/exponential.model.ie.Rd ZeBook/man/exponential.model.bis.Rd ZeBook/man/exponential.model.Rd ZeBook/man/evaluation.criteria.Rd ZeBook/man/epirice.weather.Rd ZeBook/man/epirice.multi.simule.Rd ZeBook/man/epirice.model.Rd ZeBook/man/epirice.define.param.Rd ZeBook/man/cotton.model.Rd ZeBook/man/chicks_data.Rd ZeBook/man/carcass_data.Rd ZeBook/man/carcass.model.Rd ZeBook/man/carcass.define.param.Rd ZeBook/man/carcass.EMI.simule.Rd ZeBook/man/carcass.EMI.multi.Rd ZeBook/man/carcass.EMI.model2.Rd ZeBook/man/carcass.EMI.model.Rd ZeBook/man/carbonsoil.update.Rd ZeBook/man/carbonsoil.model.Rd ZeBook/man/ZeBook-package.Rd ZeBook/man/Wheat_GPC.Rd ZeBook/man/WheatYieldGreece.Rd ZeBook/man/Sunflower_Phomopsis.Rd ZeBook/man/AICf.Rd
ZeBook/demo
ZeBook/demo/ch10maizeS8DataAssimilation.r
ZeBook/demo/ch10maizeB7Bayes_functionsMH.r
ZeBook/demo/ch10maizeB7BayesUncertainty.r
ZeBook/demo/ch10maizeB5bBayesEstimAllparam.r
ZeBook/demo/ch10maizeB5aBayesEstimRUE.r
ZeBook/demo/ch10maize7scenario.r
ZeBook/demo/ch10maize6bMSEP_ConcL.r
ZeBook/demo/ch10maize6aMSEP_OLS.r
ZeBook/demo/ch10maize5dparameterConcL_log.r
ZeBook/demo/ch10maize5cparameterConcL.r
ZeBook/demo/ch10maize5bparameterOLS_simplex.r
ZeBook/demo/ch10maize5aparameterOLS_gradient.r
ZeBook/demo/ch10maize4sensitivity.r
ZeBook/demo/ch10maize3uncertainty.r
ZeBook/demo/ch10maize2evaluation.r
ZeBook/demo/ch10maize1data.r
ZeBook/demo/ch08DLM_watbal.r
ZeBook/demo/ch08DLM_WheatYieldGreece.r
ZeBook/demo/ch08DLM_CarbonSoil.r
ZeBook/demo/ch07Bayes_Carbon.r
ZeBook/demo/ch05USA_Weed.r
ZeBook/demo/ch05USA_Magarey.r
ZeBook/demo/ch05USA_Lactation.r
ZeBook/demo/ch05USA_Carcass.r
ZeBook/demo/ch04Simulation.watbal.r
ZeBook/demo/ch04Simulation.prey.predator.r
ZeBook/demo/ch04Simulation.population.age.r
ZeBook/demo/ch04Simulation.maize.r
ZeBook/demo/ch04Simulation.exponential.r
ZeBook/demo/ch04Simulation.epirice.r
ZeBook/demo/ch03R_maize_parallel.r
ZeBook/demo/00Index
ZeBook/data
ZeBook/data/weather_SouthAsia.rda
ZeBook/data/weather_FranceWest.rda
ZeBook/data/weather_EuropeEU.rda
ZeBook/data/watbal.simobsdata.rda
ZeBook/data/seedweight.data.rda
ZeBook/data/maize.data_EuropeEU.rda
ZeBook/data/datalist
ZeBook/data/chicks_data.rda
ZeBook/data/carcass_data.rda
ZeBook/data/Wheat_GPC.rda
ZeBook/data/WheatYieldGreece.rda
ZeBook/data/Sunflower_Phomopsis.rda
ZeBook/R
ZeBook/R/weed.model.r
ZeBook/R/weather_SouthAsia_data.r
ZeBook/R/weather_FranceWest_data.r
ZeBook/R/weather_EuropeEU_data.r
ZeBook/R/watbal.simobsdata.r
ZeBook/R/watbal.model.r
ZeBook/R/verhulst.model.r
ZeBook/R/seedweight.model.r
ZeBook/R/seedweight.data_data.r
ZeBook/R/sample.r
ZeBook/R/prey.predator.model.r
ZeBook/R/population.age.model.r
ZeBook/R/maize.model.r
ZeBook/R/maize.data_EuropeEU.r
ZeBook/R/magarey.model.r
ZeBook/R/lactation.machine.model.r
ZeBook/R/lactation.calf.model.r
ZeBook/R/goodness.of.fit.r
ZeBook/R/exponential.model.r
ZeBook/R/evaluation.criteria.r
ZeBook/R/epirice.model.r
ZeBook/R/cotton.model.r
ZeBook/R/chicks_data.r
ZeBook/R/carcass_data.r
ZeBook/R/carcass.model.r
ZeBook/R/carcass.EMI.model.r
ZeBook/R/carbon.model.r
ZeBook/R/ZeBook.r
ZeBook/R/Wheat_GPC_data.r
ZeBook/R/WheatYieldGreece_data.r
ZeBook/R/Sunflower_Phomopsis_data.r
ZeBook/R/AIC.r
ZeBook/NAMESPACE
ZeBook/DESCRIPTION

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