ZeBook: ZeBook Working with dynamic models for agriculture and environment

R package accompanying the book Working with dynamic models for agriculture and environment, by Daniel Wallach (INRA), David Makowski (INRA), James W. Jones (U.of Florida), Francois Brun (ACTA), in preparation for June 2013.

Author
Francois Brun (ACTA), David Makowski (INRA), Daniel Wallach (INRA), James W. Jones (U.of Florida).
Date of publication
2013-06-18 00:10:49
Maintainer
Francois Brun <francois.brun@acta.asso.fr>
License
LGPL-3
Version
0.5

View on CRAN

Man pages

AICf
Calculate AIC, Akaike's Information Criterion
carbonsoil.model
The CarbonSoil model - calculate daily values over designated...
carbonsoil.update
The CarbonSoil model - calculate change in soil carbon for...
carcass_data
Data of growth of beef cattle for Carcass model
carcass.define.param
Define values of the parameters for the Carcass model
carcass.EMI.model
The Carcass (growth of beef cattle) model with energy as...
carcass.EMI.model2
The Carcass model function for use with carcass.EMI.simule
carcass.EMI.multi
Wrapper function to run Carcass model on several animals with...
carcass.EMI.simule
Wrapper function to the Carcass model for multiple sets of...
carcass.model
The Carcass (growth of beef cattle) model
chicks_data
Data of growth of chicks
cotton.model
The Cotton model (dynamic for numbers of Cotton fruiting...
epirice.define.param
Define values of the parameters for the Epirice model
epirice.model
The Epirice model (Disease model for rice)
epirice.multi.simule
Wrapper function to run Epirice multiple times (for multiple...
epirice.weather
Read weather data for Epirice (southern Asia weather)
evaluation.criteria
Calcule multiple goodness-of-fit criteria
exponential.model
The Exponential growth model of dynamic of population
exponential.model.bis
The Exponential growth model of dynamic of population -...
exponential.model.ie
The Exponential growth model of dynamic of population - with...
goodness.of.fit
Calcule multiple goodness-of-fit criteria
lactation.calf.model
The Lactation model
lactation.calf.model2
The Lactation model for use with lactation.calf.simule
lactation.calf.simule
Wrapper function to run the Lactation model for multiple sets...
lactation.define.param
Define values of the parameters for the Lactation model
lactation.model.machine
The Lactation model with milking machine
lactation.model.machine2
The Lactation model for use with lactation.machine.simule
magarey.define.param
Define values of the parameters for the Magarey model
magarey.model
The Magarey model
magarey.model2
The Magarey model, taking a vector of parameters as argument
magarey.simule
Wrapper function to run the Magarey model multiple times (for...
maize_cir.model
The Maize model with additional state variable CumInt
maize_cir_rue_ear.model
The Maize model with temperature dependent RUE, CumInt and...
maize_cir_rue.model
The Maize model with temperature dependent RUE and CumInt
maize.data_EuropeEU
maize biomass and leaf area data
maize.define.param
Define values of the parameters for the Maize model
maize.model
The basic Maize model.
maize.model2
The basic Maize model for use with maize.simule
maize.multisy
Wrapping function to run maize model on several site-years
maize.multisy240
Wrapper function to run Maize model for multiple sets of...
maize.RUEtemp
Calculate effect of temperature on RUE for Maize
maize.simule
Wrapper function to run Maize model for multiple sets of...
maize.simule240
Wrapper function to run Maize model multiple times for...
maize.simule_multisy240
Wrapper function to run Maize model for multiple sets of...
maize.weather
Read weather data for the Maize model
param.rtriangle
Generate a random plan as a data frame. Columns are...
param.runif
Generate a random plan as a data frame. Columns are...
population.age.matrix.model
The PopulationAge model (Population Dynamics with Age...
population.age.model
The PopulationAge model (Population Dynamics with Age...
population.age.model.ode
The PopulationAge model (Population Dynamics with Age...
predator.prey.model
The PredatorPrey model (Predator-Prey Lotka-Volterra with...
q.arg.fast.runif
Build the q.arg argument for the FAST function (sensitivity...
seedweight.data
Wheat grain weight measurements after anthesis
seedweight.model
The SeedWeight model
Sunflower_Phomopsis
Phomopsis stem canker observations for Sunflower
threshold.measures
TO COMPLETE Computation of threshold.measures
verhulst.model
The Verhulst (logistic) model - calculate daily values over...
verhulst.update
The Verhulst (logistic) model - calculate change for one day
watbal.define.param
Define values of the parameters for the WaterBalance model
watbal.model
WaterBalance model - calculate soil water over designated...
watbal.model.arid
WaterBalance model - Variant with another order of...
watbal.simobsdata
Soil water content measurements and associated simulations...
watbal.update
WaterBalance model - calculate change in soil water for one...
watbal.weather
Read weather data for the WaterBalance model (West of France...
weather_EuropeEU
Weather serie for Europe EU from NASA POWER agroclimatology
weather_FranceWest
Weather series for western France from NASA POWER...
weather_SouthAsia
Weather series for southern Asia from NASA POWER...
weed.define.param
Define parameter values of the Weed model
weed.model
The Weed model - calculate daily values over designated time...
weed.simule
Wrapper function to run the Weed model multiple times (for...
weed.update
The Weed model - calculate change for one year
Wheat_GPC
Grain Protein Contents in Wheat Grains
WheatYieldGreece
National Wheat Yield evolution for Greece from FAO
ZeBook-package
ZeBook : Working with dynamic models for agriculture and...

Files in this package

ZeBook
ZeBook/MD5
ZeBook/man
ZeBook/man/weed.update.Rd
ZeBook/man/weed.simule.Rd
ZeBook/man/weed.model.Rd
ZeBook/man/weed.define.param.Rd
ZeBook/man/weather_SouthAsia.Rd
ZeBook/man/weather_FranceWest.Rd
ZeBook/man/weather_EuropeEU.Rd
ZeBook/man/watbal.weather.Rd
ZeBook/man/watbal.update.Rd
ZeBook/man/watbal.simobsdata.Rd
ZeBook/man/watbal.model.arid.Rd
ZeBook/man/watbal.model.Rd
ZeBook/man/watbal.define.param.Rd
ZeBook/man/verhulst.update.Rd
ZeBook/man/verhulst.model.Rd
ZeBook/man/threshold.measures.Rd
ZeBook/man/seedweight.model.Rd
ZeBook/man/seedweight.data.Rd
ZeBook/man/q.arg.fast.runif.Rd
ZeBook/man/predator.prey.model.Rd
ZeBook/man/population.age.model.ode.Rd
ZeBook/man/population.age.model.Rd
ZeBook/man/population.age.matrix.model.Rd
ZeBook/man/param.runif.Rd
ZeBook/man/param.rtriangle.Rd
ZeBook/man/maize_cir_rue_ear.model.Rd
ZeBook/man/maize_cir_rue.model.Rd
ZeBook/man/maize_cir.model.Rd
ZeBook/man/maize.weather.Rd
ZeBook/man/maize.simule_multisy240.Rd
ZeBook/man/maize.simule240.Rd
ZeBook/man/maize.simule.Rd
ZeBook/man/maize.multisy240.Rd
ZeBook/man/maize.multisy.Rd
ZeBook/man/maize.model2.Rd
ZeBook/man/maize.model.Rd
ZeBook/man/maize.define.param.Rd
ZeBook/man/maize.data_EuropeEU.Rd
ZeBook/man/maize.RUEtemp.Rd
ZeBook/man/magarey.simule.Rd
ZeBook/man/magarey.model2.Rd
ZeBook/man/magarey.model.Rd
ZeBook/man/magarey.define.param.Rd
ZeBook/man/lactation.model.machine2.Rd
ZeBook/man/lactation.model.machine.Rd
ZeBook/man/lactation.define.param.Rd
ZeBook/man/lactation.calf.simule.Rd
ZeBook/man/lactation.calf.model2.Rd
ZeBook/man/lactation.calf.model.Rd
ZeBook/man/goodness.of.fit.Rd
ZeBook/man/exponential.model.ie.Rd
ZeBook/man/exponential.model.bis.Rd
ZeBook/man/exponential.model.Rd
ZeBook/man/evaluation.criteria.Rd
ZeBook/man/epirice.weather.Rd
ZeBook/man/epirice.multi.simule.Rd
ZeBook/man/epirice.model.Rd
ZeBook/man/epirice.define.param.Rd
ZeBook/man/cotton.model.Rd
ZeBook/man/chicks_data.Rd
ZeBook/man/carcass_data.Rd
ZeBook/man/carcass.model.Rd
ZeBook/man/carcass.define.param.Rd
ZeBook/man/carcass.EMI.simule.Rd
ZeBook/man/carcass.EMI.multi.Rd
ZeBook/man/carcass.EMI.model2.Rd
ZeBook/man/carcass.EMI.model.Rd
ZeBook/man/carbonsoil.update.Rd
ZeBook/man/carbonsoil.model.Rd
ZeBook/man/ZeBook-package.Rd
ZeBook/man/Wheat_GPC.Rd
ZeBook/man/WheatYieldGreece.Rd
ZeBook/man/Sunflower_Phomopsis.Rd
ZeBook/man/AICf.Rd
ZeBook/demo
ZeBook/demo/ch10maizeS8DataAssimilation.r
ZeBook/demo/ch10maizeB7Bayes_functionsMH.r
ZeBook/demo/ch10maizeB7BayesUncertainty.r
ZeBook/demo/ch10maizeB5bBayesEstimAllparam.r
ZeBook/demo/ch10maizeB5aBayesEstimRUE.r
ZeBook/demo/ch10maize7scenario.r
ZeBook/demo/ch10maize6bMSEP_ConcL.r
ZeBook/demo/ch10maize6aMSEP_OLS.r
ZeBook/demo/ch10maize5dparameterConcL_log.r
ZeBook/demo/ch10maize5cparameterConcL.r
ZeBook/demo/ch10maize5bparameterOLS_simplex.r
ZeBook/demo/ch10maize5aparameterOLS_gradient.r
ZeBook/demo/ch10maize4sensitivity.r
ZeBook/demo/ch10maize3uncertainty.r
ZeBook/demo/ch10maize2evaluation.r
ZeBook/demo/ch10maize1data.r
ZeBook/demo/ch08DLM_watbal.r
ZeBook/demo/ch08DLM_WheatYieldGreece.r
ZeBook/demo/ch08DLM_CarbonSoil.r
ZeBook/demo/ch07Bayes_Carbon.r
ZeBook/demo/ch05USA_Weed.r
ZeBook/demo/ch05USA_Magarey.r
ZeBook/demo/ch05USA_Lactation.r
ZeBook/demo/ch05USA_Carcass.r
ZeBook/demo/ch04Simulation.watbal.r
ZeBook/demo/ch04Simulation.prey.predator.r
ZeBook/demo/ch04Simulation.population.age.r
ZeBook/demo/ch04Simulation.maize.r
ZeBook/demo/ch04Simulation.exponential.r
ZeBook/demo/ch04Simulation.epirice.r
ZeBook/demo/ch03R_maize_parallel.r
ZeBook/demo/00Index
ZeBook/data
ZeBook/data/weather_SouthAsia.rda
ZeBook/data/weather_FranceWest.rda
ZeBook/data/weather_EuropeEU.rda
ZeBook/data/watbal.simobsdata.rda
ZeBook/data/seedweight.data.rda
ZeBook/data/maize.data_EuropeEU.rda
ZeBook/data/datalist
ZeBook/data/chicks_data.rda
ZeBook/data/carcass_data.rda
ZeBook/data/Wheat_GPC.rda
ZeBook/data/WheatYieldGreece.rda
ZeBook/data/Sunflower_Phomopsis.rda
ZeBook/R
ZeBook/R/weed.model.r
ZeBook/R/weather_SouthAsia_data.r
ZeBook/R/weather_FranceWest_data.r
ZeBook/R/weather_EuropeEU_data.r
ZeBook/R/watbal.simobsdata.r
ZeBook/R/watbal.model.r
ZeBook/R/verhulst.model.r
ZeBook/R/seedweight.model.r
ZeBook/R/seedweight.data_data.r
ZeBook/R/sample.r
ZeBook/R/prey.predator.model.r
ZeBook/R/population.age.model.r
ZeBook/R/maize.model.r
ZeBook/R/maize.data_EuropeEU.r
ZeBook/R/magarey.model.r
ZeBook/R/lactation.machine.model.r
ZeBook/R/lactation.calf.model.r
ZeBook/R/goodness.of.fit.r
ZeBook/R/exponential.model.r
ZeBook/R/evaluation.criteria.r
ZeBook/R/epirice.model.r
ZeBook/R/cotton.model.r
ZeBook/R/chicks_data.r
ZeBook/R/carcass_data.r
ZeBook/R/carcass.model.r
ZeBook/R/carcass.EMI.model.r
ZeBook/R/carbon.model.r
ZeBook/R/ZeBook.r
ZeBook/R/Wheat_GPC_data.r
ZeBook/R/WheatYieldGreece_data.r
ZeBook/R/Sunflower_Phomopsis_data.r
ZeBook/R/AIC.r
ZeBook/NAMESPACE
ZeBook/DESCRIPTION