API for abcdeFBA
ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance Analysis with this package.
| Global functions | |
|---|---|
| BFD_Processor | Man page |
| BYPASS_REACTIONS_SUBSTRATE | Man page |
| CHANGE_OBJ_FUNCTION | Man page |
| CHANGE_RXN_BOUNDS | Man page |
| Change Reaction Bounds | Man page |
| DEGREE_MEASURE | Man page |
| Ec_iAF1260_flux1 | Man page |
| Ec_iAF1260_flux2 | Man page |
| Ec_iJR904 | Man page |
| Ecoli_core | Man page |
| Exhaustive_double_deletion | Man page |
| Exhaustive_single_deletion | Man page |
| FBA_solve | Man page |
| FLUX_VAR_ANALYSIS | Man page |
| FVA_robustness | Man page |
| Flux Variability Analysis | Man page |
| Flux_Ranger | Man page |
| Gene_del | Man page |
| H_pylori_iIT341 | Man page |
| H_sapien_Recon1 | Man page |
| M_barkeri_iAF629 | Man page |
| M_tb_iNJ661 | Man page |
| Objective function | Man page |
| PERTURBATION_analysis | Man page |
| PHPP | Man page |
| Robustness analysis using FVA | Man page |
| SBML | Man page |
| SEARCH_metabolite | Man page |
| SEARCH_reaction | Man page |
| SINGLE_DEL_FLUXOME | Man page |
| S_aureus_iSB619 | Man page |
| S_cerevisiae_IND750 | Man page |
| Search-metabolite | Man page |
| Search-reaction | Man page |
| Sybil_2_FBA_obj | Man page |
| Sybil_S4_object | Man page |
| View_objective | Man page |
| alternative pathways | Man page |
| bypass reactions for metabolites | Man page |
| change objective | Man page |
| comparison of single deletion flux distributions | Man page |
| degree-measure | Man page |
| double knockout | Man page |
| double knockout result processor | Man page |
| double synthetic lethality | Man page |
| flux distribution comparisons | Man page |
| flux_difference_plotter | Man page |
| fluxome graphs | Man page |
| gene deletion | Man page |
| genetic mutants | Man page |
| in-degree | Man page |
| objective function | Man page |
| out-degree | Man page |
| parallel multi-core simulation | Man page |
| phenotypic phase plane analysis | Man page |
| ramp-down | Man page |
| ramp-up | Man page |
| robustness analysis | Man page |
| single knockouts | Man page |
| solve FBA problem | Man page |
