Sybil_2_FBA_obj: Sybil_2_FBA_obj, a function to convert a model generated by...

In abcdeFBA: ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance Analysis with this package.

Description

Changes the S4 object read by Sybil which is available on CRAN into a list usable by abcdeFBA.

Usage

Sybil_2_FBA_obj(Sybil_S4_object)

Arguments

Sybil_S4_object

Is an S4 object of class modelorg

Examples

#Model conversion
#data(Ecoli_core) - # the Ecoli_core model included in the Sybil package
#FBA_obj<-Sybil_2_FBA_obj(Ecoli_core)

Example output

Loading required package: Rglpk
Loading required package: slam
Using the GLPK callable library version 4.52
Loading required package: rgl
Loading required package: corrplot
corrplot 0.84 loaded
Loading required package: lattice
Warning messages:
1: In rgl.init(initValue, onlyNULL) : RGL: unable to open X11 display
2: 'rgl_init' failed, running with rgl.useNULL = TRUE 
3: .onUnload failed in unloadNamespace() for 'rgl', details:
  call: fun(...)
  error: object 'rgl_quit' not found 

abcdeFBA documentation built on May 2, 2019, 9:19 a.m.