| BFDProcessor | BFD_Processor, a Bi-Flux-Del-Processor function |
| change_obj_function | CHANGE_OBJ_FUNCTION, a function to change the objective for... |
| change_rxn_bounds | CHANGE_RXN_BOUNDS, Change Reaction Bounds |
| deg_meas | DEGREE_MEASURE, measures the in-degree and out-degree of the... |
| Ec_iAF1260_flux1 | E.coli model 1260 ORF's |
| Ec_iAF1260_flux2 | E.coli model 1260 ORF's |
| Ec_iJR904 | E.coli model 904 ORF's |
| Ecoli_core | E.coli core model 72 reactions and 95 metabolites |
| Exhaustive_double_deletion | Exhaustive_double_deletion, a function for computing... |
| Exhaustive_single_deletion | Exhaustive_single_deletion, a function that deletes each... |
| FBA_solve | FBA_solve, a function to solve CBM problems |
| fdiff | flux_difference_plotter, a function to plot two pre-existing... |
| flux_ranger | Flux_Ranger - a function to create a flux ramp. |
| fva | FLUX_VAR_ANALYSIS, a function to perform a flux variability... |
| fva_robustness | FVA_robustness, a function to determine the change in... |
| Gene_del | Gene_del, a function to create Gene Deletion mutants |
| H_pylori_iIT341 | Helicobacter pylori by Ines Thiele |
| H_sapien_Recon1 | H. sapien Recon1, human metabolic network reconstruction |
| M_barkeri_iAF629 | Genome scale metabolic model for the archaeal methanogen M.... |
| metab_connect | BYPASS_REACTIONS_SUBSTRATE, to find the influx and efflux... |
| metab_srch | SEARCH_metabolite, a function to search for metabolites in a... |
| M_tb_iNJ661 | M. tuberculosis model iNJ661 |
| PERTURBATION_analysis | PERTURBATION_analysis, a function for robustness analysis. |
| PHPP | PHPP, phenotypic phase plane analysis |
| rxn_srch | SEARCH_reaction, a function to search for reactions in a... |
| S_aureus_iSB619 | Staphylococcus aureus model iSB619 by S.Becker |
| S_cerevisiae_IND750 | Saccharomyces Cerevisiae iND750 |
| sing_del_flxme | SINGLE_DEL_FLUXOME, a function to generate comparative... |
| Sybil_2_FBA_obj | Sybil_2_FBA_obj, a function to convert a model generated by... |
| View_objective | View_objective, a function that shows the components of the... |
