Man pages for abemus
Adaptive Base Error Model in Ultra-Deep Sequencing Data
| abemus | ABEMUS: Adaptive per Base Error Model in Ultra-deep... |
| apply_scaling_factor | Apply the scaling factor R to get the most suitable... |
| bed2positions | Unwrap a list of genomic intervals into a list of loci... |
| bombanel_afs | [data] Allelic Fractions from simulated data |
| bombanel_covs | [data] Coverage levels from simulated data |
| bombanel_tab_cov_pbem | [data] Matrix of pbem thresholds |
| callsnvs | Call somatic SNVs by using both global and local error models |
| compute_afthreshold | Compute coverage-based and not-coverage-based allelic... |
| compute_pbem | Compute the per-base error measure (pbem) for each targeted... |
| get_case_mean_coverage | Compute the mean coverage of a CASE sample |
| get_target_size | Compute total number of loci covered in a BED file |
| split_pacbam_bychrom | Split PaCBAM ouputs by chromosomes |
| tab_optimal_R | [data] Summary table to select the best scaling factor R |
