get_target_size: Compute total number of loci covered in a BED file
In abemus: Adaptive Base Error Model in Ultra-Deep Sequencing Data
Description
Usage
Arguments
Value
Examples
View source: R/get_target_size.R
Description
Compute total number of loci covered in a BED file
Usage
1
get_target_size(targetbed, Mbp = TRUE)
Arguments
targetbed
Genomic regions in the BED tab-delimited format.
Mbp
Return count as Mbp. default: TRUE
Value
Mbp covered in the targetbed
Examples
1
2
targetbed <- system.file("extdata", "regions_toy.bed", package = "abemus")
target_size <- get_target_size(targetbed=targetbed, Mbp = TRUE)
abemus documentation built on Dec. 19, 2019, 1:07 a.m.
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Description Usage Arguments Value Examples
View source: R/get_target_size.R
Description
Compute total number of loci covered in a BED file
Usage
1 | get_target_size(targetbed, Mbp = TRUE)
|
Arguments
targetbed |
Genomic regions in the BED tab-delimited format. |
Mbp |
Return count as Mbp. default: TRUE |
Value
Mbp covered in the targetbed
Examples
1 2 | targetbed <- system.file("extdata", "regions_toy.bed", package = "abemus")
target_size <- get_target_size(targetbed=targetbed, Mbp = TRUE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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