Man pages for activityGCMM
Circular Mixed Effect Mixture Models of Animal Activity Patterns
| activityHPD | Activity highest posterior density interval estimates... |
| activityHPDmean | Activity highest posterior density interval from mean... |
| APDatPeak | Activity Probability Density at Peak Time of Another |
| APDpointplot | Activity Probability Density Point Plot |
| calcAPD | Calculate activity probability density |
| calcprop | Calculate proportions of circular variable within an interval |
| circaxis | Axis labels for circular temporal data plots |
| circplotHPD | Circular plot of activity HPD intervals |
| circplotmeans | Circular plot of GCMM means |
| circplotREs | Random Effects Circular Plot |
| combineMCMC | Combine MCMC chains for posterior simulations |
| comboplot | GCMM Combined Plot |
| compareGCMM | Compare GCMM parameters or estimates |
| compareGCMMfit | Compare fit of GCMM models based on circular residuals |
| componentsplot | GCMM Components Plot |
| convertRad | Convert Radians Scale |
| exampleGCMM | Executable example of GCMM function |
| extractparam | Extract parameters for posterior simulations |
| GCMM | Generalized circular mixed effect mixture (GCMM) model |
| GCMMpdens | Predict activity probability density at a time point |
| GCMMpeaksplot | Plot estimated time of activity peaks |
| GCMMppc | Posterior predictive check of GCMM model |
| GCMMprob | Probability of Activity during Time Period |
| GCMMsims | Create GCMM simulations |
| GCMMsimsparams | Extract GCMM parameters for running GCMM simulations |
| HDI | Calculate highest density interval |
| HPDoverlap | Activity HPD Overlap |
| humanssample | Sample data of camera trap observations of humans |
| mixtureplot | GCMM Mixture Plot |
| mode | Mode |
| multiplot | Plot multiple GCMM activity curves |
| PDS | Posterior distribution summaries and support |
| peaksPDplot | Plot estimated number of activity peaks |
| plotactivityHPD | Plot activity curve with activityHPDs |
| plotGCMMsamples | Plot GCMM Activity Curve Posterior Samples |
| plotREs | Plot GCMM activity curve with random intercepts |
| posteriorhistplot | Plot histogram of posterior distribution |
| progress | Report function progress |
| redfoxsample | Sample data of camera trap observations of red fox |
| samplerows | Sample rows of dataframe |
| sumCircResids | Calculate sum of absolute circular residuals |
| updateGCMM | Extend GCMM analysis |
| xaxis | Axis labels for temporal activity plots |
| yMax | Calculate y-axis limit for plotting multiple activity curves |
