plotGCMMsamples: Plot GCMM Activity Curve Posterior Samples

In activityGCMM: Circular Mixed Effect Mixture Models of Animal Activity Patterns

Description

Plot GCMM activity curve posterior samples for visualizing estimate uncertatinty

Usage

plotGCMMsamples(
  model,
  sample = 100,
  scale = "NULL",
  ymax = "NULL",
  plotmean = TRUE,
  RGB = c(200, 200, 200),
  alpha = 0.05,
  axisunits = "radians",
  lines = TRUE,
  cex.axis = 0.8
)

Arguments

model	Object of class GCMM with output from GCMM function
sample	Number of posterior samples to plot; default=100
scale	Scale for which to plot the activity curve, either "pi" for -pi, pi or "2pi" for 0, 2pi; default is that which is recommended by the GCMM function
ymax	Value to use as upper limit for y-axis
plotmean	Logical argument for whether to plot activity curve from posterior distribution mean; default=TRUE
RGB	Vector of RBG values for line colour
alpha	Value for line transparency, between 0 (completely transparent) to 1 (completely opaque); default=0.05
axisunits	Scale to use for the xaxis, either "radians", "time", "solar", "sun", or "non"; default="radians"
lines	Whether to include lines on the graph for the x axis labels; default=TRUE
cex.axis	Font size for axis labels

Value

No return value; prints plot of activity curve posterior samples

activityGCMM documentation built on June 15, 2021, 1:06 a.m.