comboplot: GCMM Combined Plot

In activityGCMM: Circular Mixed Effect Mixture Models of Animal Activity Patterns

Description

Combined plot of estimated activity curve from mixture model and separate mixture components

Usage

comboplot(
  model,
  rug = FALSE,
  ruglwd = 2,
  ltyc = 2,
  ltym = 1,
  lwdc = 3,
  lwdm = 3,
  colc = c("grey40", "grey55", "grey70", "grey85"),
  colm = "black",
  scale = "NULL",
  ymax = "NULL",
  axisunits = c("radians", "sun", "solar", "time", "none"),
  xlines = TRUE
)

Arguments

model	Model output from GCMM function, object of class GCMM
rug	Logical argument for whether to plot a rug of the raw values. Plotting the rug for the separate components requires that saveclustIDs=TRUE when running GCMM. default=FALSE
ruglwd	Line width for rug plot
ltyc	Line type for activity curves for components
ltym	Line type for activity curves for mixture
lwdc	Line width for activity curve lines for components
lwdm	Line width for activity curve lines from mixture
colc	Character vector for colours for the activity curve lines and rug plot for components; must be of equal length to the number of components
colm	Character vector for colour of activity curve line from mixture model
scale	Scale for the plot, either "pi" (-pi, pi) or "2pi" (0, 2pi); default is that recommended by the GCMM function
ymax	Value for upper limit of y-axis
axisunits	Scale to use for the xaxis, either "radians", "time", "solar", "sun", or "none"; default="radians"
xlines	Whether to include lines on the graph for the x axis labels; default=TRUE

Value

Prints combined plot of estimated activity curve from mixture model and separate mixture components

Examples

 FoxActivityGCMM<-GCMM(data=redfoxsample$Radians, 
              RE1=redfoxsample$SamplingPeriod, family="vonmises", autorun=FALSE,
              adapt=0, sample=300, burnin=300, thin=1,n.chains=2)
           comboplot(FoxActivityGCMM) 
 

activityGCMM documentation built on June 15, 2021, 1:06 a.m.