adhoc: Calculate Ad Hoc Distance Thresholds for DNA Barcoding Identification
Version 1.1

Two functions to calculate intra- and interspecific pairwise distances, evaluate DNA barcoding identification error and calculate an ad hoc distance threshold for each particular reference library of DNA barcodes. Specimen identification at this ad hoc distance threshold (using the best close match method) will produce identifications with an estimated relative error probability that can be fixed by the user (e.g. 5%).

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AuthorGontran Sonet
Date of publication2017-03-17 18:56:42 UTC
MaintainerGontran Sonet <gosonet@gmail.com>
LicenseGPL (>= 2)
Version1.1
URL http://jemu.myspecies.info/computer-programs
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("adhoc")

Man pages

adhoc-package: Calculation of ad hoc distance thresholds for DNA barcoding...
adhocTHR: Calculation of an ad hoc distance threshold for DNA barcoding...
checkDNAbcd: Evaluation of a reference library of aligned DNA barcodes
tephdata: DNA sequences of Tephritids to use as an example dataset for...

Functions

adhoc Man page
adhoc-package Man page
adhocTHR Man page Source code
checkDNAbcd Man page Source code
tephdata Man page

Files

inst
inst/CITATION
NAMESPACE
data
data/tephdata.rda
R
R/adhocTHR.R
R/checkDNAbcd.R
MD5
DESCRIPTION
man
man/tephdata.Rd
man/adhoc-package.Rd
man/adhocTHR.Rd
man/checkDNAbcd.Rd
adhoc documentation built on May 19, 2017, 1:34 p.m.