adhoc: calculate ad hoc distance thresholds for DNA barcoding identification

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An ad hoc distance threshold can be calculated for each particular reference library of DNA barcodes. Specimen identification at this ad hoc distance threshold (using the best close match method) will produce identifications with an estimated relative error probability that can be fixed by the user (e.g. 5%)

Author
Gontran Sonet
Date of publication
2013-12-13 12:42:11
Maintainer
Gontran Sonet <gosonet@gmail.com>
License
GPL (>= 2)
Version
1.0
URLs

View on CRAN

Man pages

adhoc-package
Calculation of ad hoc distance thresholds for DNA barcoding...
adhocTHR
Calculation of an ad hoc distance threshold for DNA barcoding...
checkDNAbcd
Evaluation of a reference library of aligned DNA barcodes
tephdata
DNA sequences of Tephritids to use as an example dataset for...

Files in this package

adhoc
adhoc/NAMESPACE
adhoc/data
adhoc/data/tephdata.rda
adhoc/R
adhoc/R/adhocTHR.R
adhoc/R/checkDNAbcd.R
adhoc/MD5
adhoc/DESCRIPTION
adhoc/man
adhoc/man/tephdata.Rd
adhoc/man/adhoc-package.Rd
adhoc/man/adhocTHR.Rd
adhoc/man/checkDNAbcd.Rd