adhoc: Calculate Ad Hoc Distance Thresholds for DNA Barcoding Identification

Two functions to calculate intra- and interspecific pairwise distances, evaluate DNA barcoding identification error and calculate an ad hoc distance threshold for each particular reference library of DNA barcodes. Specimen identification at this ad hoc distance threshold (using the best close match method) will produce identifications with an estimated relative error probability that can be fixed by the user (e.g. 5%).

AuthorGontran Sonet
Date of publication2017-03-17 18:56:42 UTC
MaintainerGontran Sonet <gosonet@gmail.com>
LicenseGPL (>= 2)
Version1.1
http://jemu.myspecies.info/computer-programs

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Files

adhoc
adhoc/inst
adhoc/inst/CITATION
adhoc/NAMESPACE
adhoc/data
adhoc/data/tephdata.rda
adhoc/R
adhoc/R/adhocTHR.R adhoc/R/checkDNAbcd.R
adhoc/MD5
adhoc/DESCRIPTION
adhoc/man
adhoc/man/tephdata.Rd adhoc/man/adhoc-package.Rd adhoc/man/adhocTHR.Rd adhoc/man/checkDNAbcd.Rd

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