tephdata: DNA sequences of Tephritids to use as an example dataset for...

Description Usage Format References Examples

Description

DNA sequences (326 sequences of 656 base pairs) of the cytochrome c oxidase subunit I (COI) gene of Tephritids (Diptera) (see Virgilio et al. 2012) to use as an example dataset for package adhoc (Sonet et al. 2013).

Usage

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Format

326 DNA sequences in binary format stored in a matrix.

References

Sonet G, Jordaens K, Nagy ZT, Breman FC, De Meyer M, Backeljau T & Virgilio M", "(2013) Adhoc: an R package to calculate ad hoc distance thresholds for DNA barcoding identification, Zookeys, 365:329-336. http://zookeys.pensoft.net/articles.php?id=3057.

Virgilio M, Jordaens K, Breman FC, Backeljau T, De Meyer M. (2012) Identifying insects with incomplete DNA barcode libraries, African Fruit flies (Diptera: Tephritidae) as a test case. PLoS ONE 7(2) e31581. doi: 10.1371/journal.pone.0031581.

Examples

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adhoc documentation built on May 2, 2019, 2:36 a.m.