atoxgr_criteria_daids: Metadata Holding Grading Criteria for DAIDs
In admiral: ADaM in R Asset Library
atoxgr_criteria_daids R Documentation
Metadata Holding Grading Criteria for DAIDs
Description
Metadata Holding Grading Criteria for DAIDs
Usage
atoxgr_criteria_daids
Format
An object of class tbl_df (inherits from tbl, data.frame) with 63 rows and 15 columns.
Details
This metadata has its origin in the ADLB Grading Spec Excel file which ships with {admiral}
and can be accessed using system.file("adlb_grading/adlb_grading_spec.xlsx", package = "admiral")
in sheet = "DAIDS".
The dataset contained in there has the following columns:
-
SOC: variable to hold the SOC of the lab test criteria.
-
TERM: variable to hold the term describing the criteria applied to a particular lab test,
eg. 'Anemia' or 'INR Increased'. Note: the variable is case insensitive.
-
SUBGROUP : Description of sub-group of subjects were grading will be applied (i.e. >= 18 years)
-
Grade 1: Criteria defining lab value as Grade 1.
-
Grade 2: Criteria defining lab value as Grade 2.
-
Grade 3: Criteria defining lab value as Grade 3.
-
Grade 4: Criteria defining lab value as Grade 4.
-
Grade 5: Criteria defining lab value as Grade 5.
-
Definition: Holds the definition of the lab test abnormality.
-
FILTER : admiral code to apply the filter based on SUBGROUP column.
-
GRADE_CRITERIA_CODE: variable to hold code that creates grade based on defined criteria.
-
SI_UNIT_CHECK: variable to hold unit of particular lab test. Used to check against input data
if criteria is based on absolute values.
-
VAR_CHECK: List of variables required to implement lab grade criteria. Use to check against
input data.
-
DIRECTION: variable to hold the direction of the abnormality of a particular lab test
value. 'L' is for LOW values, 'H' is for HIGH values. Note: the variable is case insensitive.
-
COMMENT: Holds any information regarding rationale behind implementation of grading criteria.
Note: Variables SOC, TERM, SUBGROUP, Grade 1, Grade 2,Grade 3,Grade 4,Grade 5, Definition
are from the source document on DAIDS website defining the grading criteria.
[Division of AIDS (DAIDS) Table for Grading the Severity of Adult and Pediatric Adverse Events
From these variables only 'TERM' is used in the {admiral} code, the rest are for information and
traceability only.
See Also
Other metadata:
atoxgr_criteria_ctcv4,
atoxgr_criteria_ctcv5,
country_code_lookup,
dose_freq_lookup
admiral documentation built on June 22, 2024, 9:06 a.m.
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| atoxgr_criteria_daids | R Documentation |
Metadata Holding Grading Criteria for DAIDs
Description
Metadata Holding Grading Criteria for DAIDs
Usage
atoxgr_criteria_daids
Format
An object of class tbl_df (inherits from tbl, data.frame) with 63 rows and 15 columns.
Details
This metadata has its origin in the ADLB Grading Spec Excel file which ships with {admiral}
and can be accessed using system.file("adlb_grading/adlb_grading_spec.xlsx", package = "admiral")
in sheet = "DAIDS".
The dataset contained in there has the following columns:
-
SOC: variable to hold the SOC of the lab test criteria. -
TERM: variable to hold the term describing the criteria applied to a particular lab test, eg. 'Anemia' or 'INR Increased'. Note: the variable is case insensitive. -
SUBGROUP: Description of sub-group of subjects were grading will be applied (i.e. >= 18 years) -
Grade 1: Criteria defining lab value as Grade 1. -
Grade 2: Criteria defining lab value as Grade 2. -
Grade 3: Criteria defining lab value as Grade 3. -
Grade 4: Criteria defining lab value as Grade 4. -
Grade 5: Criteria defining lab value as Grade 5. -
Definition: Holds the definition of the lab test abnormality. -
FILTER:admiralcode to apply the filter based on SUBGROUP column. -
GRADE_CRITERIA_CODE: variable to hold code that creates grade based on defined criteria. -
SI_UNIT_CHECK: variable to hold unit of particular lab test. Used to check against input data if criteria is based on absolute values. -
VAR_CHECK: List of variables required to implement lab grade criteria. Use to check against input data. -
DIRECTION: variable to hold the direction of the abnormality of a particular lab test value. 'L' is for LOW values, 'H' is for HIGH values. Note: the variable is case insensitive. -
COMMENT: Holds any information regarding rationale behind implementation of grading criteria.
Note: Variables SOC, TERM, SUBGROUP, Grade 1, Grade 2,Grade 3,Grade 4,Grade 5, Definition
are from the source document on DAIDS website defining the grading criteria.
[Division of AIDS (DAIDS) Table for Grading the Severity of Adult and Pediatric Adverse Events
From these variables only 'TERM' is used in the {admiral} code, the rest are for information and
traceability only.
See Also
Other metadata:
atoxgr_criteria_ctcv4,
atoxgr_criteria_ctcv5,
country_code_lookup,
dose_freq_lookup
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