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# Copyright (c) 2019 - 2023, Adrian Dusa
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, in whole or in part, are permitted provided that the
# following conditions are met:
# * Redistributions of source code must retain the above copyright
# notice, this list of conditions and the following disclaimer.
# * Redistributions in binary form must reproduce the above copyright
# notice, this list of conditions and the following disclaimer in the
# documentation and/or other materials provided with the distribution.
# * The names of its contributors may NOT be used to endorse or promote products
# derived from this software without specific prior written permission.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
# ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
# WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
# DISCLAIMED. IN NO EVENT SHALL ADRIAN DUSA BE LIABLE FOR ANY
# DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
# (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
# LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
# ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
# SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
`export` <-
function(x, file = "", ...) {
export.args <- list(...)
Call <- as.list(match.call(expand.dots = TRUE))[-1]
caseid <- "cases"
if (any(names(export.args) == "caseid")) {
caseid <- export.args[["caseid"]]
Call[["caseid"]] <- NULL
}
if (!missing(x)) {
if (is.data.frame(x) | is.matrix(x)) {
if (any(rownames(x) != seq(nrow(x)))) {
if (all(colnames(x) != caseid)) {
x <- cbind("cases" = rownames(x), x)
names(x)[1] <- caseid
}
}
}
}
Call[["x"]] <- x
if (any(names(export.args) == "sep")) {
if (export.args[["sep"]] == "tab") {
export.args[["sep"]] <- "\t"
}
Call[["sep"]] <- export.args[["sep"]]
}
else {
Call[["sep"]] <- ","
}
if (any(names(export.args) == "col.names")) {
Call[["col.names"]] <- export.args[["col.names"]]
}
if (any(names(export.args) == "row.names")) {
message("The argument 'row.names' is always set to FALSE, by default.")
}
Call[["row.names"]] <- FALSE
do.call("write.table", Call)
}
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