Man pages for amadeus
Accessing and Analyzing Large-Scale Environmental Data
| apply_extent | Apply extent to the processed data |
| as_mysftime | Create an 'sftime' object |
| calc_check_time | Check time values |
| calc_message | Send progress messages |
| calc_prepare_locs | Prepare extraction locations |
| calc_return_locs | Prepare covariates for return |
| calc_setcolumns | Set column names |
| calc_time | Prepare time values |
| calculate_covariates | Calculate covariates wrapper function |
| calculate_cropscape | Calculate Cropscape covariates |
| calculate_ecoregion | Calculate ecoregions covariates |
| calculate_geos | Calculate atmospheric composition covariates |
| calculate_gmted | Calculate elevation covariates |
| calculate_gridmet | Calculate gridMET covariates |
| calculate_groads | Calculate roads covariates |
| calculate_hms | Calculate wildfire smoke covariates |
| calculate_huc | Calculate HUC covariates |
| calculate_koppen_geiger | Calculate climate classification covariates |
| calculate_lagged | Calculate temporally lagged covariates |
| calculate_merra2 | Calculate meteorological and atmospheric covariates |
| calculate_modis | Calculate MODIS product covariates in multiple CPU threads |
| calculate_modis_daily | A single-date MODIS worker |
| calculate_narr | Calculate meteorological covariates |
| calculate_nei | Calculate road emissions covariates |
| calculate_nlcd | Calculate land cover covariates |
| calculate_population | Calculate population density covariates |
| calculate_prism | Calculate PRISM covariates |
| calculate_temporal_dummies | Calculate temporal dummy covariates |
| calculate_terraclimate | Calculate TerraClimate covariates |
| calculate_tri | Calculate toxic release covariates |
| calc_worker | Perform covariate extraction |
| check_destfile | Check if destination file exists or is 0 bytes. |
| check_for_null_parameters | Check parameters |
| check_geom | Check that 'geom' value is one of 'FALSE', '"sf"', or... |
| check_mysf | Check 'sf' object |
| check_mysftime | Check 'sftime' object |
| check_urls | Implement 'check_url_status' |
| check_url_status | Check HTTP status |
| collapse_nlcd | Collapse listed NLCD values while filling in NA for sites... |
| cov | Calculate code coverage of the 'beethoven' package with the... |
| download_aqs | Download air quality data |
| download_cropscape | Download CropScape data |
| download_data | Download raw data wrapper function |
| download_ecoregion | Download ecoregion data |
| download_edgar | Download EDGAR Emissions Data |
| download_geos | Download atmospheric composition data |
| download_gmted | Download elevation data |
| download_gridmet | Download gridMET data |
| download_groads | Download roads data |
| download_hash | Create hash of downloaded files. |
| download_hms | Download wildfire smoke data |
| download_huc | Download National Hydrography Dataset (NHD) data |
| download_koppen_geiger | Download climate classification data |
| download_merra2 | Download meteorological and atmospheric data |
| download_modis | Download MODIS product files |
| download_narr | Download meteorological data |
| download_nei | Download road emissions data |
| download_nlcd | Download land cover data |
| download_permit | Check data download acknowledgement |
| download_population | Download population density data |
| download_prism | Download PRISM data |
| download_remove_command | Remove download commands |
| download_remove_zips | Remove zip files |
| download_run | Run download commands |
| download_sanitize_path | Sanitize directory |
| download_setup_dir | Setup directory |
| download_sink | Sink download commands |
| download_terraclimate | Download TerraClimate data |
| download_tri | Download toxic release data |
| download_unzip | Unzip zip files |
| dt_as_mysftime | Convert a 'data.table' to an 'sftime' |
| extract_urls | Extract download URLs |
| generate_date_sequence | Generate date sequence |
| generate_time_sequence | Generate time sequence |
| interactive | Open interactive session with 'container.sif' container. |
| is_date_proper | Check date format |
| narr_variable | Sort NOAA NARR variables |
| process_aqs | Process U.S. EPA AQS daily CSV data |
| process_blackmarble | Assign VIIRS Black Marble products corner coordinates to... |
| process_blackmarble_corners | Process Black Marble corners |
| process_collection | Process GEOS-CF and MERRA2 collection codes |
| process_conformity | Check input assumptions |
| process_covariates | Process raw data wrapper function |
| process_cropscape | Process CropScape data |
| process_ecoregion | Process ecoregion data |
| process_flatten_sds | Process MODIS layers |
| process_geos | Process atmospheric composition data |
| process_gmted | Process elevation data |
| process_gmted_codes | Process elevation statistic and resolution codes |
| process_gridmet | Process gridMET data |
| process_gridmet_codes | Process gridMET variable codes |
| process_groads | Process roads data |
| process_hms | Process wildfire smoke data |
| process_huc | Retrieve Hydrologic Unit Code (HUC) data |
| process_koppen_geiger | Process climate classification data |
| process_locs_radius | Process locations buffer |
| process_locs_vector | Process locations as 'SpatVector' |
| process_merra2 | Process meteorological and atmospheric data |
| process_merra2_time | Process MERRA2 time steps |
| process_modis_merge | Process MODIS .hdf files |
| process_modis_sds | Process MODIS sub-datasets |
| process_modis_swath | Mosaic MODIS swaths |
| process_modis_warp | Warp MODIS swath data into rectilinear grid raster |
| process_narr | Process meteorological data |
| process_nei | Process road emissions data |
| process_nlcd | Process land cover data |
| process_population | Process population density data |
| process_prism | Process PRISM data |
| process_sedac_codes | Process population resolution code |
| process_terraclimate | Process TerraClimate data |
| process_terraclimate_codes | Process terraClimate variable codes |
| process_tri | Process toxic release data |
| process_variable_codes | Filter gridMET and terraClimate variable names and variable... |
| read_commands | Import download commands |
| rename_time | Rename '$time' |
| sf_as_mysftime | Convert an 'sf' to an 'sftime' |
| sftime_as_mysftime | Convert an 'sftime' to a 'mysftime' |
| sftime_as_sf | Convert an 'sftime' to an 'sf' |
| sftime_as_spatraster | Convert an 'sftime' to a 'SpatRaster' |
| sftime_as_spatrds | Convert an 'sftime' to a 'SpatRasterDataset' |
| sftime_as_spatvector | Convert an 'sftime' to a 'SpatVector' |
| spatraster_as_sftime | Convert a 'SpatRaster' to an 'sftime' |
| spatrds_as_sftime | Convert a 'SpatRasterDataset' to an 'sftime' |
| spatvector_as_sftime | Convert a 'SpatVector' to an 'sftime' |
| sum_edc | Calculate isotropic Sum of Exponentially Decaying... |
| test | Run all tests within a single file from tests/testthat/... |
| test_download_functions | Download unit tests |
