Man pages for amber
Automated Model Benchmarking R Package
| amber-package | Overview of AMBER functions |
| correlationMatrix | Correlation matrix for statistical metrics computed by AMBER |
| correlationMatrixDiff | Plot a matrix that shows the difference between two... |
| correlationMatrixFluxnet | Correlation matrix for statistical metrics computed by AMBER... |
| globalSumsTable | Table of globally summed values and corresponding biases. |
| intFun.addBWtext | Add text to raster |
| intFun.anom | Anomalies |
| intFun.anom.mly | Monthly anomalies |
| intFun.bin | Make bins |
| intFun.coast | Reproject coastline |
| intFun.crmse | Centralized root mean square error (CRMSE) |
| intFun.grid.define.outlier | Upper and lower threshold values that define outliers |
| intFun.grid.na | Replace NA with zero in raster object |
| intFun.grid.outliers.na | Set all values outside a range to NA |
| intFun.grid.outliers.points | Convert outliers to spatial points |
| intFun.grid.phase | Time distance in months |
| intFun.grid.significance | Set significant differences to NA |
| intFun.grid.wilcox | Wilcox significance test |
| intFun.iav | Inter-annual variability |
| intFun.isRaster | Reproject coastline |
| intFun.min.max.int | Range and interval for color bar legend |
| intFun.min.max.int.bias | Range and interval for color bar legend (bias) |
| intFun.min.max.int.diff | Range and interval for color bar legend (difference) |
| intFun.min.max.int.ext | Range and interval for color bar legend |
| intFun.min.max.int.mod.ref | Range and interval for color bar legend for two raster... |
| intFun.min.max.int.raw | Range and interval for color bar legend |
| intFun.rel.error | Relative error used for binned data |
| intFun.rmse | Root mean square error (RMSE) |
| intFun.sampleDataFrame | random sampling across space and time for a data frame... |
| intFun.sampleGridTime | Random sampling of gridded reference data along time axis |
| intFun.sampleGridTimeAndSpace | random sampling across space and time (if available) for... |
| intFun.site.points | Make spatial points |
| intFun.theta | Time distance in months |
| metrics.compare | Compares global mean statistical meterics for multiple model... |
| plotBars | Barplots of reference and model data with same unit |
| plotEnsembleHovmoeller | Hovmoeller Diagram for model ensemble |
| plotEnsembleMean | Ensemble mean plots of AMBER results (bias, bias scores, etc) |
| plotFluxnetStats | Plots that show statistical metrics for FLUXNET sites |
| plotGrid | Plots raster layers of a raster stack object |
| plotHovmoeller | Plot Hovmoeller diagrams that show monthly climatological... |
| plotNc | Plots the time-mean of a variable stored in NetCDF model... |
| plotNcIrreg | Plots the time-mean of a variable stored in NetCDF model... |
| plotZonalMeans | Plot zonal mean values of model and reference data in a... |
| plotZonalMeanStats | Plot zonal mean plots of AMBER results (bias, bias scores,... |
| scores.compare | Compares scores from two model runs |
| scores.compare.benchmarks | Compares model scores against scores reference scores. |
| scores.compare.ensemble | Summarize scores from multiple model runs in single figure. |
| scores.fluxnet.csv | Scores for FLUXNET reference data in CSV format |
| scores.fluxnet.nc | Scores for FLUXNET reference data in NetCDF format |
| scores.fluxnet.site | Scores for FLUXNET reference data when model run at FLUXNET... |
| scores.functional.response | Response of a variable to its forcing |
| scores.grid.notime | Scores for gridded reference data that do not have a varying... |
| scores.grid.time | Scores for gridded reference data with a varying time... |
| scores.runoff | Scores for runoff |
| scores.site.notime | Scores for site-level reference data that do not vary in time |
| scores.tables | Summarize results in a table and a plot |
| scores.tables.tweak | Tweak summary table |
| seasonalCycle | Zonal mean plots of model and reference data |
| seasonalCycleIrreg | Zonal mean plots of model and reference data on an irregular... |
| zonalMean | Zonal mean plots of model and reference data |
| zonalMeanIrreg | Zonal mean plots of model and reference data on an irregular... |
| zonalMeanStats | Zonal mean plots of AMBER results (bias, bias scores, etc) |
