amen: Additive and Multiplicative Effects Models for Networks and Relational Data

Analysis of dyadic network and relational data using additive and multiplicative effects (AME) models. The basic model includes regression terms, the covariance structure of the social relations model (Warner, Kenny and Stoto (1979), Wong (1982)), and multiplicative factor models (Hoff(2009)). Four different link functions accommodate different relational data structures, including binary/network data (bin), normal relational data (nrm), ordinal relational data (ord) and data from fixed-rank nomination schemes (frn). Several of these link functions are discussed in Hoff, Fosdick, Volfovsky and Stovel (2013). Development of this software was supported in part by NIH grant R01HD067509.

AuthorPeter Hoff, Bailey Fosdick, Alex Volfovsky, Yanjun He
Date of publication2015-06-26 20:09:47
MaintainerPeter Hoff <pdhoff@uw.edu>
LicenseGPL-3
Version1.1

View on CRAN

Man pages

addhealthc3: AddHealth community 3 data

addhealthc9: AddHealth community 9 data

addlines: Add lines

ame: AME model fitting routine

amen-package: Additive and Multiplicative Effects Models for Networks and...

ame_rep: AME model fitting routine for replicated relational data

circplot: Circular network plot

coldwar: Cold War data

comtrade: Comtrade data

design_array: Computes the design socioarray of covariate values

dutchcollege: Dutch college data

el2sm: Edgelist to sociomatrix

gofstats: Goodness of fit statistics

IR90s: International relations in the 90s

lazegalaw: Lazega's law firm data

mhalf: Symmetric square root of a matrix

netplot: Network plotting

plot.ame: Plot results of an AME object

raSab_bin_fc: Simulate a and Sab from full conditional distributions under...

raSab_cbin_fc: Simulate a and Sab from full conditional distributions under...

raSab_frn_fc: Simulate a and Sab from full conditional distributions under...

rbeta_ab_fc: Gibbs sampling of additive row and column effects and...

rbeta_ab_rep_fc: Gibbs sampling of additive row and column effects and...

rmvnorm: Simulation from a multivariate normal distribution

rrho_mh: Metropolis update for dyadic correlation

rrho_mh_rep: Metropolis update for dyadic correlation with independent...

rs2_fc: Gibbs update for dyadic variance

rs2_rep_fc: Gibbs update for dyadic variance with independent replicate...

rUV_fc: Gibbs sampling of U and V

rUV_rep_fc: Gibbs sampling of U and V

rUV_sym_fc: Gibbs sampling of U and V

rwish: Simulation from a Wishart distribution

rZ_bin_fc: Simulate Z based on a probit model

rZ_cbin_fc: Simulate Z given fixed rank nomination data

rZ_frn_fc: Simulate Z given fixed rank nomination data

rZ_nrm_fc: Simulate missing values in a normal AME model

rZ_ord_fc: Simulate Z given the partial ranks

rZ_rrl_fc: Simulate Z given relative rank nomination data

sampsonmonks: Sampson's monastery data

sheep: Sheep dominance data

simY_bin: Simulate a network, i.e. a binary relational matrix

simY_frn: Simulate an relational matrix based on a fixed rank...

simY_nrm: Simulate a normal relational matrix

simY_ord: Simulate an ordinal relational matrix

simY_rrl: Simulate an relational matrix based on a relative rank...

simZ: Simulate Z given its expectation and covariance

sm2el: Sociomatrix to edgelist

summary.ame: Summary of an AME object

Xbeta: Linear combinations of submatrices of an array

xnet: Network embedding

YX_bin: binary relational data and covariates

YX_bin_long: binary relational data and covariates

YX_cbin: Censored binary nomination data and covariates

YX_frn: Fixed rank nomination data and covariates

YX_nrm: normal relational data and covariates

YX_ord: ordinal relational data and covariates

YX_rrl: row-specific ordinal relational data and covariates

zscores: rank-based z-scores

Files in this package

amen
amen/inst
amen/inst/doc
amen/inst/doc/amen.R
amen/inst/doc/amen.pdf
amen/inst/doc/amen.Rnw
amen/NAMESPACE
amen/data
amen/data/YX_bin.RData
amen/data/coldwar.RData
amen/data/YX_frn.RData
amen/data/comtrade.RData
amen/data/addhealthc9.RData
amen/data/addhealthc3.RData
amen/data/sheep.RData
amen/data/YX_ord.RData
amen/data/lazegalaw.RData
amen/data/YX_nrm.RData
amen/data/dutchcollege.RData
amen/data/YX_rrl.RData
amen/data/YX_cbin.RData
amen/data/datalist
amen/data/YX_bin_long.RData
amen/data/sampsonmonks.RData
amen/data/IR90s.RData
amen/R
amen/R/simZ.R amen/R/simY_bin.R amen/R/circplot.R amen/R/rZ_frn_fc.R amen/R/Xbeta.R amen/R/summary.ame.R amen/R/rZ_rrl.R amen/R/simY_frn.R amen/R/rbeta_ab_fc.R amen/R/simY_rrl.R amen/R/simY_ord.R amen/R/rZ_bin_fc.R amen/R/simY_nrm.R amen/R/rmvnorm.R amen/R/rZ_cbin_fc.R amen/R/el2sm.R amen/R/rbeta_ab_rep_fc.R amen/R/netplot.R amen/R/sm2el.R amen/R/rs2_fc.R amen/R/ame_rep.R amen/R/rUV_sym_fc.R amen/R/gofstats.R amen/R/amen-package.R amen/R/addlines.R amen/R/rrho_mh.R amen/R/rUV_rep_fc.R amen/R/raSab_cbin_fc.R amen/R/rUV_fc.R amen/R/rs2_rep_fc.R amen/R/xnet.R amen/R/rwish.R amen/R/rZ_ord_fc.R amen/R/raSab_frn_fc.R amen/R/rrho_mh_rep.R amen/R/mhalf.R amen/R/zscores.R amen/R/ame.R amen/R/plot.ame.R amen/R/rZ_nrm_fc.R amen/R/raSab_bin_fc.R amen/R/design_array.R
amen/vignettes
amen/vignettes/amen.Rnw
amen/MD5
amen/build
amen/build/vignette.rds
amen/DESCRIPTION
amen/man
amen/man/rZ_rrl_fc.Rd amen/man/simY_rrl.Rd amen/man/raSab_cbin_fc.Rd amen/man/addhealthc3.Rd amen/man/ame.Rd amen/man/rmvnorm.Rd amen/man/rUV_fc.Rd amen/man/lazegalaw.Rd amen/man/gofstats.Rd amen/man/design_array.Rd amen/man/YX_bin.Rd amen/man/raSab_bin_fc.Rd amen/man/YX_cbin.Rd amen/man/netplot.Rd amen/man/comtrade.Rd amen/man/mhalf.Rd amen/man/simY_nrm.Rd amen/man/sampsonmonks.Rd amen/man/simY_ord.Rd amen/man/YX_rrl.Rd amen/man/sheep.Rd amen/man/dutchcollege.Rd amen/man/IR90s.Rd amen/man/rUV_rep_fc.Rd amen/man/YX_bin_long.Rd amen/man/rrho_mh_rep.Rd amen/man/Xbeta.Rd amen/man/plot.ame.Rd amen/man/rs2_fc.Rd amen/man/zscores.Rd amen/man/YX_nrm.Rd amen/man/addhealthc9.Rd amen/man/rZ_frn_fc.Rd amen/man/raSab_frn_fc.Rd amen/man/rZ_nrm_fc.Rd amen/man/YX_ord.Rd amen/man/rbeta_ab_fc.Rd amen/man/rZ_cbin_fc.Rd amen/man/rZ_ord_fc.Rd amen/man/rs2_rep_fc.Rd amen/man/circplot.Rd amen/man/simY_frn.Rd amen/man/simY_bin.Rd amen/man/rZ_bin_fc.Rd amen/man/coldwar.Rd amen/man/YX_frn.Rd amen/man/addlines.Rd amen/man/sm2el.Rd amen/man/summary.ame.Rd amen/man/ame_rep.Rd amen/man/rUV_sym_fc.Rd amen/man/rrho_mh.Rd amen/man/amen-package.Rd amen/man/xnet.Rd amen/man/el2sm.Rd amen/man/simZ.Rd amen/man/rbeta_ab_rep_fc.Rd amen/man/rwish.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.