Analysis of dyadic network and relational data using additive and multiplicative effects (AME) models. The basic model includes regression terms, the covariance structure of the social relations model (Warner, Kenny and Stoto (1979), Wong (1982)), and multiplicative factor models (Hoff(2009)). Four different link functions accommodate different relational data structures, including binary/network data (bin), normal relational data (nrm), ordinal relational data (ord) and data from fixedrank nomination schemes (frn). Several of these link functions are discussed in Hoff, Fosdick, Volfovsky and Stovel (2013). Development of this software was supported in part by NIH grant R01HD067509.
Author  Peter Hoff, Bailey Fosdick, Alex Volfovsky, Yanjun He 
Date of publication  20150626 20:09:47 
Maintainer  Peter Hoff <pdhoff@uw.edu> 
License  GPL3 
Version  1.1 
Package repository  View on CRAN 
Installation  Install the latest version of this package by entering the following in R:



All man pages Function index File listing
Man pages  

addhealthc3: AddHealth community 3 data  
addhealthc9: AddHealth community 9 data  
addlines: Add lines  
ame: AME model fitting routine  
amenpackage: Additive and Multiplicative Effects Models for Networks and...  
ame_rep: AME model fitting routine for replicated relational data  
circplot: Circular network plot  
coldwar: Cold War data  
comtrade: Comtrade data  
design_array: Computes the design socioarray of covariate values  
dutchcollege: Dutch college data  
el2sm: Edgelist to sociomatrix  
gofstats: Goodness of fit statistics  
IR90s: International relations in the 90s  
lazegalaw: Lazega's law firm data  
mhalf: Symmetric square root of a matrix  
netplot: Network plotting  
plot.ame: Plot results of an AME object  
raSab_bin_fc: Simulate a and Sab from full conditional distributions under...  
raSab_cbin_fc: Simulate a and Sab from full conditional distributions under...  
raSab_frn_fc: Simulate a and Sab from full conditional distributions under...  
rbeta_ab_fc: Gibbs sampling of additive row and column effects and...  
rbeta_ab_rep_fc: Gibbs sampling of additive row and column effects and...  
rmvnorm: Simulation from a multivariate normal distribution  
rrho_mh: Metropolis update for dyadic correlation  
rrho_mh_rep: Metropolis update for dyadic correlation with independent...  
rs2_fc: Gibbs update for dyadic variance  
rs2_rep_fc: Gibbs update for dyadic variance with independent replicate...  
rUV_fc: Gibbs sampling of U and V  
rUV_rep_fc: Gibbs sampling of U and V  
rUV_sym_fc: Gibbs sampling of U and V  
rwish: Simulation from a Wishart distribution  
rZ_bin_fc: Simulate Z based on a probit model  
rZ_cbin_fc: Simulate Z given fixed rank nomination data  
rZ_frn_fc: Simulate Z given fixed rank nomination data  
rZ_nrm_fc: Simulate missing values in a normal AME model  
rZ_ord_fc: Simulate Z given the partial ranks  
rZ_rrl_fc: Simulate Z given relative rank nomination data  
sampsonmonks: Sampson's monastery data  
sheep: Sheep dominance data  
simY_bin: Simulate a network, i.e. a binary relational matrix  
simY_frn: Simulate an relational matrix based on a fixed rank...  
simY_nrm: Simulate a normal relational matrix  
simY_ord: Simulate an ordinal relational matrix  
simY_rrl: Simulate an relational matrix based on a relative rank...  
simZ: Simulate Z given its expectation and covariance  
sm2el: Sociomatrix to edgelist  
summary.ame: Summary of an AME object  
Xbeta: Linear combinations of submatrices of an array  
xnet: Network embedding  
YX_bin: binary relational data and covariates  
YX_bin_long: binary relational data and covariates  
YX_cbin: Censored binary nomination data and covariates  
YX_frn: Fixed rank nomination data and covariates  
YX_nrm: normal relational data and covariates  
YX_ord: ordinal relational data and covariates  
YX_rrl: rowspecific ordinal relational data and covariates  
zscores: rankbased zscores 
Functions  

IR90s  Man page 
Xbeta  Man page Source code 
YX_bin  Man page 
YX_bin_long  Man page 
YX_cbin  Man page 
YX_frn  Man page 
YX_nrm  Man page 
YX_ord  Man page 
YX_rrl  Man page 
addhealthc3  Man page 
addhealthc9  Man page 
addlines  Man page Source code 
ame  Man page Source code 
ame_rep  Man page Source code 
amen  Man page 
amenpackage  Man page 
circplot  Man page Source code 
coldwar  Man page 
comtrade  Man page 
design_array  Man page Source code 
dutchcollege  Man page 
el2sm  Man page Source code 
gofstats  Man page Source code 
lazegalaw  Man page 
mhalf  Man page Source code 
netplot  Man page Source code 
plot.ame  Man page Source code 
rUV_fc  Man page Source code 
rUV_rep_fc  Man page Source code 
rUV_sym_fc  Man page Source code 
rZ_bin_fc  Man page Source code 
rZ_cbin_fc  Man page Source code 
rZ_frn_fc  Man page Source code 
rZ_nrm_fc  Man page Source code 
rZ_ord_fc  Man page Source code 
rZ_rrl_fc  Man page Source code 
raSab_bin_fc  Man page Source code 
raSab_cbin_fc  Man page Source code 
raSab_frn_fc  Man page Source code 
rbeta_ab_fc  Man page Source code 
rbeta_ab_rep_fc  Man page Source code 
rmvnorm  Man page Source code 
rrho_mh  Man page Source code 
rrho_mh_rep  Man page Source code 
rs2_fc  Man page Source code 
rs2_rep_fc  Man page Source code 
rwish  Man page Source code 
sampsonmonks  Man page 
sheep  Man page 
simY_bin  Man page Source code 
simY_frn  Man page Source code 
simY_nrm  Man page Source code 
simY_ord  Man page Source code 
simY_rrl  Man page Source code 
simZ  Man page Source code 
sm2el  Man page Source code 
summary.ame  Man page Source code 
xnet  Man page Source code 
zscores  Man page Source code 
Files  

inst
 
inst/doc
 
inst/doc/amen.R  
inst/doc/amen.pdf
 
inst/doc/amen.Rnw
 
NAMESPACE
 
data
 
data/YX_bin.RData
 
data/coldwar.RData
 
data/YX_frn.RData
 
data/comtrade.RData
 
data/addhealthc9.RData
 
data/addhealthc3.RData
 
data/sheep.RData
 
data/YX_ord.RData
 
data/lazegalaw.RData
 
data/YX_nrm.RData
 
data/dutchcollege.RData
 
data/YX_rrl.RData
 
data/YX_cbin.RData
 
data/datalist
 
data/YX_bin_long.RData
 
data/sampsonmonks.RData
 
data/IR90s.RData
 
R
 
R/simZ.R  
R/simY_bin.R  
R/circplot.R  
R/rZ_frn_fc.R  
R/Xbeta.R  
R/summary.ame.R  
R/rZ_rrl.R  
R/simY_frn.R  
R/rbeta_ab_fc.R  
R/simY_rrl.R  
R/simY_ord.R  
R/rZ_bin_fc.R  
R/simY_nrm.R  
R/rmvnorm.R  
R/rZ_cbin_fc.R  
R/el2sm.R  
R/rbeta_ab_rep_fc.R  
R/netplot.R  
R/sm2el.R  
R/rs2_fc.R  
R/ame_rep.R  
R/rUV_sym_fc.R  
R/gofstats.R  
R/amenpackage.R  
R/addlines.R  
R/rrho_mh.R  
R/rUV_rep_fc.R  
R/raSab_cbin_fc.R  
R/rUV_fc.R  
R/rs2_rep_fc.R  
R/xnet.R  
R/rwish.R  
R/rZ_ord_fc.R  
R/raSab_frn_fc.R  
R/rrho_mh_rep.R  
R/mhalf.R  
R/zscores.R  
R/ame.R  
R/plot.ame.R  
R/rZ_nrm_fc.R  
R/raSab_bin_fc.R  
R/design_array.R  
vignettes
 
vignettes/amen.Rnw
 
MD5
 
build
 
build/vignette.rds
 
DESCRIPTION
 
man
 
man/rZ_rrl_fc.Rd  
man/simY_rrl.Rd  
man/raSab_cbin_fc.Rd  
man/addhealthc3.Rd  
man/ame.Rd  
man/rmvnorm.Rd  
man/rUV_fc.Rd  
man/lazegalaw.Rd  
man/gofstats.Rd  
man/design_array.Rd  
man/YX_bin.Rd  
man/raSab_bin_fc.Rd  
man/YX_cbin.Rd  
man/netplot.Rd  
man/comtrade.Rd  
man/mhalf.Rd  
man/simY_nrm.Rd  
man/sampsonmonks.Rd  
man/simY_ord.Rd  
man/YX_rrl.Rd  
man/sheep.Rd  
man/dutchcollege.Rd  
man/IR90s.Rd  
man/rUV_rep_fc.Rd  
man/YX_bin_long.Rd  
man/rrho_mh_rep.Rd  
man/Xbeta.Rd  
man/plot.ame.Rd  
man/rs2_fc.Rd  
man/zscores.Rd  
man/YX_nrm.Rd  
man/addhealthc9.Rd  
man/rZ_frn_fc.Rd  
man/raSab_frn_fc.Rd  
man/rZ_nrm_fc.Rd  
man/YX_ord.Rd  
man/rbeta_ab_fc.Rd  
man/rZ_cbin_fc.Rd  
man/rZ_ord_fc.Rd  
man/rs2_rep_fc.Rd  
man/circplot.Rd  
man/simY_frn.Rd  
man/simY_bin.Rd  
man/rZ_bin_fc.Rd  
man/coldwar.Rd  
man/YX_frn.Rd  
man/addlines.Rd  
man/sm2el.Rd  
man/summary.ame.Rd  
man/ame_rep.Rd  
man/rUV_sym_fc.Rd  
man/rrho_mh.Rd  
man/amenpackage.Rd  
man/xnet.Rd  
man/el2sm.Rd  
man/simZ.Rd  
man/rbeta_ab_rep_fc.Rd  
man/rwish.Rd 
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