amen: Additive and Multiplicative Effects Models for Networks and Relational Data

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Analysis of dyadic network and relational data using additive and multiplicative effects (AME) models. The basic model includes regression terms, the covariance structure of the social relations model (Warner, Kenny and Stoto (1979), Wong (1982)), and multiplicative factor models (Hoff(2009)). Four different link functions accommodate different relational data structures, including binary/network data (bin), normal relational data (nrm), ordinal relational data (ord) and data from fixed-rank nomination schemes (frn). Several of these link functions are discussed in Hoff, Fosdick, Volfovsky and Stovel (2013). Development of this software was supported in part by NIH grant R01HD067509.

Author
Peter Hoff, Bailey Fosdick, Alex Volfovsky, Yanjun He
Date of publication
2015-06-26 20:09:47
Maintainer
Peter Hoff <pdhoff@uw.edu>
License
GPL-3
Version
1.1

View on CRAN

Man pages

addhealthc3
AddHealth community 3 data
addhealthc9
AddHealth community 9 data
addlines
Add lines
ame
AME model fitting routine
amen-package
Additive and Multiplicative Effects Models for Networks and...
ame_rep
AME model fitting routine for replicated relational data
circplot
Circular network plot
coldwar
Cold War data
comtrade
Comtrade data
design_array
Computes the design socioarray of covariate values
dutchcollege
Dutch college data
el2sm
Edgelist to sociomatrix
gofstats
Goodness of fit statistics
IR90s
International relations in the 90s
lazegalaw
Lazega's law firm data
mhalf
Symmetric square root of a matrix
netplot
Network plotting
plot.ame
Plot results of an AME object
raSab_bin_fc
Simulate a and Sab from full conditional distributions under...
raSab_cbin_fc
Simulate a and Sab from full conditional distributions under...
raSab_frn_fc
Simulate a and Sab from full conditional distributions under...
rbeta_ab_fc
Gibbs sampling of additive row and column effects and...
rbeta_ab_rep_fc
Gibbs sampling of additive row and column effects and...
rmvnorm
Simulation from a multivariate normal distribution
rrho_mh
Metropolis update for dyadic correlation
rrho_mh_rep
Metropolis update for dyadic correlation with independent...
rs2_fc
Gibbs update for dyadic variance
rs2_rep_fc
Gibbs update for dyadic variance with independent replicate...
rUV_fc
Gibbs sampling of U and V
rUV_rep_fc
Gibbs sampling of U and V
rUV_sym_fc
Gibbs sampling of U and V
rwish
Simulation from a Wishart distribution
rZ_bin_fc
Simulate Z based on a probit model
rZ_cbin_fc
Simulate Z given fixed rank nomination data
rZ_frn_fc
Simulate Z given fixed rank nomination data
rZ_nrm_fc
Simulate missing values in a normal AME model
rZ_ord_fc
Simulate Z given the partial ranks
rZ_rrl_fc
Simulate Z given relative rank nomination data
sampsonmonks
Sampson's monastery data
sheep
Sheep dominance data
simY_bin
Simulate a network, i.e. a binary relational matrix
simY_frn
Simulate an relational matrix based on a fixed rank...
simY_nrm
Simulate a normal relational matrix
simY_ord
Simulate an ordinal relational matrix
simY_rrl
Simulate an relational matrix based on a relative rank...
simZ
Simulate Z given its expectation and covariance
sm2el
Sociomatrix to edgelist
summary.ame
Summary of an AME object
Xbeta
Linear combinations of submatrices of an array
xnet
Network embedding
YX_bin
binary relational data and covariates
YX_bin_long
binary relational data and covariates
YX_cbin
Censored binary nomination data and covariates
YX_frn
Fixed rank nomination data and covariates
YX_nrm
normal relational data and covariates
YX_ord
ordinal relational data and covariates
YX_rrl
row-specific ordinal relational data and covariates
zscores
rank-based z-scores

Files in this package

amen
amen/inst
amen/inst/doc
amen/inst/doc/amen.R
amen/inst/doc/amen.pdf
amen/inst/doc/amen.Rnw
amen/NAMESPACE
amen/data
amen/data/YX_bin.RData
amen/data/coldwar.RData
amen/data/YX_frn.RData
amen/data/comtrade.RData
amen/data/addhealthc9.RData
amen/data/addhealthc3.RData
amen/data/sheep.RData
amen/data/YX_ord.RData
amen/data/lazegalaw.RData
amen/data/YX_nrm.RData
amen/data/dutchcollege.RData
amen/data/YX_rrl.RData
amen/data/YX_cbin.RData
amen/data/datalist
amen/data/YX_bin_long.RData
amen/data/sampsonmonks.RData
amen/data/IR90s.RData
amen/R
amen/R/simZ.R
amen/R/simY_bin.R
amen/R/circplot.R
amen/R/rZ_frn_fc.R
amen/R/Xbeta.R
amen/R/summary.ame.R
amen/R/rZ_rrl.R
amen/R/simY_frn.R
amen/R/rbeta_ab_fc.R
amen/R/simY_rrl.R
amen/R/simY_ord.R
amen/R/rZ_bin_fc.R
amen/R/simY_nrm.R
amen/R/rmvnorm.R
amen/R/rZ_cbin_fc.R
amen/R/el2sm.R
amen/R/rbeta_ab_rep_fc.R
amen/R/netplot.R
amen/R/sm2el.R
amen/R/rs2_fc.R
amen/R/ame_rep.R
amen/R/rUV_sym_fc.R
amen/R/gofstats.R
amen/R/amen-package.R
amen/R/addlines.R
amen/R/rrho_mh.R
amen/R/rUV_rep_fc.R
amen/R/raSab_cbin_fc.R
amen/R/rUV_fc.R
amen/R/rs2_rep_fc.R
amen/R/xnet.R
amen/R/rwish.R
amen/R/rZ_ord_fc.R
amen/R/raSab_frn_fc.R
amen/R/rrho_mh_rep.R
amen/R/mhalf.R
amen/R/zscores.R
amen/R/ame.R
amen/R/plot.ame.R
amen/R/rZ_nrm_fc.R
amen/R/raSab_bin_fc.R
amen/R/design_array.R
amen/vignettes
amen/vignettes/amen.Rnw
amen/MD5
amen/build
amen/build/vignette.rds
amen/DESCRIPTION
amen/man
amen/man/rZ_rrl_fc.Rd
amen/man/simY_rrl.Rd
amen/man/raSab_cbin_fc.Rd
amen/man/addhealthc3.Rd
amen/man/ame.Rd
amen/man/rmvnorm.Rd
amen/man/rUV_fc.Rd
amen/man/lazegalaw.Rd
amen/man/gofstats.Rd
amen/man/design_array.Rd
amen/man/YX_bin.Rd
amen/man/raSab_bin_fc.Rd
amen/man/YX_cbin.Rd
amen/man/netplot.Rd
amen/man/comtrade.Rd
amen/man/mhalf.Rd
amen/man/simY_nrm.Rd
amen/man/sampsonmonks.Rd
amen/man/simY_ord.Rd
amen/man/YX_rrl.Rd
amen/man/sheep.Rd
amen/man/dutchcollege.Rd
amen/man/IR90s.Rd
amen/man/rUV_rep_fc.Rd
amen/man/YX_bin_long.Rd
amen/man/rrho_mh_rep.Rd
amen/man/Xbeta.Rd
amen/man/plot.ame.Rd
amen/man/rs2_fc.Rd
amen/man/zscores.Rd
amen/man/YX_nrm.Rd
amen/man/addhealthc9.Rd
amen/man/rZ_frn_fc.Rd
amen/man/raSab_frn_fc.Rd
amen/man/rZ_nrm_fc.Rd
amen/man/YX_ord.Rd
amen/man/rbeta_ab_fc.Rd
amen/man/rZ_cbin_fc.Rd
amen/man/rZ_ord_fc.Rd
amen/man/rs2_rep_fc.Rd
amen/man/circplot.Rd
amen/man/simY_frn.Rd
amen/man/simY_bin.Rd
amen/man/rZ_bin_fc.Rd
amen/man/coldwar.Rd
amen/man/YX_frn.Rd
amen/man/addlines.Rd
amen/man/sm2el.Rd
amen/man/summary.ame.Rd
amen/man/ame_rep.Rd
amen/man/rUV_sym_fc.Rd
amen/man/rrho_mh.Rd
amen/man/amen-package.Rd
amen/man/xnet.Rd
amen/man/el2sm.Rd
amen/man/simZ.Rd
amen/man/rbeta_ab_rep_fc.Rd
amen/man/rwish.Rd