amen: Additive and Multiplicative Effects Models for Networks and Relational Data
Version 1.1

Analysis of dyadic network and relational data using additive and multiplicative effects (AME) models. The basic model includes regression terms, the covariance structure of the social relations model (Warner, Kenny and Stoto (1979), Wong (1982)), and multiplicative factor models (Hoff(2009)). Four different link functions accommodate different relational data structures, including binary/network data (bin), normal relational data (nrm), ordinal relational data (ord) and data from fixed-rank nomination schemes (frn). Several of these link functions are discussed in Hoff, Fosdick, Volfovsky and Stovel (2013). Development of this software was supported in part by NIH grant R01HD067509.

AuthorPeter Hoff, Bailey Fosdick, Alex Volfovsky, Yanjun He
Date of publication2015-06-26 20:09:47
MaintainerPeter Hoff <pdhoff@uw.edu>
LicenseGPL-3
Version1.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("amen")

Getting started

Package overview

Popular man pages

amen-package: Additive and Multiplicative Effects Models for Networks and...
design_array: Computes the design socioarray of covariate values
el2sm: Edgelist to sociomatrix
gofstats: Goodness of fit statistics
rwish: Simulation from a Wishart distribution
summary.ame: Summary of an AME object
YX_nrm: normal relational data and covariates
See all...

All man pages Function index File listing

Man pages

addhealthc3: AddHealth community 3 data
addhealthc9: AddHealth community 9 data
addlines: Add lines
ame: AME model fitting routine
amen-package: Additive and Multiplicative Effects Models for Networks and...
ame_rep: AME model fitting routine for replicated relational data
circplot: Circular network plot
coldwar: Cold War data
comtrade: Comtrade data
design_array: Computes the design socioarray of covariate values
dutchcollege: Dutch college data
el2sm: Edgelist to sociomatrix
gofstats: Goodness of fit statistics
IR90s: International relations in the 90s
lazegalaw: Lazega's law firm data
mhalf: Symmetric square root of a matrix
netplot: Network plotting
plot.ame: Plot results of an AME object
raSab_bin_fc: Simulate a and Sab from full conditional distributions under...
raSab_cbin_fc: Simulate a and Sab from full conditional distributions under...
raSab_frn_fc: Simulate a and Sab from full conditional distributions under...
rbeta_ab_fc: Gibbs sampling of additive row and column effects and...
rbeta_ab_rep_fc: Gibbs sampling of additive row and column effects and...
rmvnorm: Simulation from a multivariate normal distribution
rrho_mh: Metropolis update for dyadic correlation
rrho_mh_rep: Metropolis update for dyadic correlation with independent...
rs2_fc: Gibbs update for dyadic variance
rs2_rep_fc: Gibbs update for dyadic variance with independent replicate...
rUV_fc: Gibbs sampling of U and V
rUV_rep_fc: Gibbs sampling of U and V
rUV_sym_fc: Gibbs sampling of U and V
rwish: Simulation from a Wishart distribution
rZ_bin_fc: Simulate Z based on a probit model
rZ_cbin_fc: Simulate Z given fixed rank nomination data
rZ_frn_fc: Simulate Z given fixed rank nomination data
rZ_nrm_fc: Simulate missing values in a normal AME model
rZ_ord_fc: Simulate Z given the partial ranks
rZ_rrl_fc: Simulate Z given relative rank nomination data
sampsonmonks: Sampson's monastery data
sheep: Sheep dominance data
simY_bin: Simulate a network, i.e. a binary relational matrix
simY_frn: Simulate an relational matrix based on a fixed rank...
simY_nrm: Simulate a normal relational matrix
simY_ord: Simulate an ordinal relational matrix
simY_rrl: Simulate an relational matrix based on a relative rank...
simZ: Simulate Z given its expectation and covariance
sm2el: Sociomatrix to edgelist
summary.ame: Summary of an AME object
Xbeta: Linear combinations of submatrices of an array
xnet: Network embedding
YX_bin: binary relational data and covariates
YX_bin_long: binary relational data and covariates
YX_cbin: Censored binary nomination data and covariates
YX_frn: Fixed rank nomination data and covariates
YX_nrm: normal relational data and covariates
YX_ord: ordinal relational data and covariates
YX_rrl: row-specific ordinal relational data and covariates
zscores: rank-based z-scores

Functions

IR90s Man page
Xbeta Man page Source code
YX_bin Man page
YX_bin_long Man page
YX_cbin Man page
YX_frn Man page
YX_nrm Man page
YX_ord Man page
YX_rrl Man page
addhealthc3 Man page
addhealthc9 Man page
addlines Man page Source code
ame Man page Source code
ame_rep Man page Source code
amen Man page
amen-package Man page
circplot Man page Source code
coldwar Man page
comtrade Man page
design_array Man page Source code
dutchcollege Man page
el2sm Man page Source code
gofstats Man page Source code
lazegalaw Man page
mhalf Man page Source code
netplot Man page Source code
plot.ame Man page Source code
rUV_fc Man page Source code
rUV_rep_fc Man page Source code
rUV_sym_fc Man page Source code
rZ_bin_fc Man page Source code
rZ_cbin_fc Man page Source code
rZ_frn_fc Man page Source code
rZ_nrm_fc Man page Source code
rZ_ord_fc Man page Source code
rZ_rrl_fc Man page Source code
raSab_bin_fc Man page Source code
raSab_cbin_fc Man page Source code
raSab_frn_fc Man page Source code
rbeta_ab_fc Man page Source code
rbeta_ab_rep_fc Man page Source code
rmvnorm Man page Source code
rrho_mh Man page Source code
rrho_mh_rep Man page Source code
rs2_fc Man page Source code
rs2_rep_fc Man page Source code
rwish Man page Source code
sampsonmonks Man page
sheep Man page
simY_bin Man page Source code
simY_frn Man page Source code
simY_nrm Man page Source code
simY_ord Man page Source code
simY_rrl Man page Source code
simZ Man page Source code
sm2el Man page Source code
summary.ame Man page Source code
xnet Man page Source code
zscores Man page Source code

Files

inst
inst/doc
inst/doc/amen.R
inst/doc/amen.pdf
inst/doc/amen.Rnw
NAMESPACE
data
data/YX_bin.RData
data/coldwar.RData
data/YX_frn.RData
data/comtrade.RData
data/addhealthc9.RData
data/addhealthc3.RData
data/sheep.RData
data/YX_ord.RData
data/lazegalaw.RData
data/YX_nrm.RData
data/dutchcollege.RData
data/YX_rrl.RData
data/YX_cbin.RData
data/datalist
data/YX_bin_long.RData
data/sampsonmonks.RData
data/IR90s.RData
R
R/simZ.R
R/simY_bin.R
R/circplot.R
R/rZ_frn_fc.R
R/Xbeta.R
R/summary.ame.R
R/rZ_rrl.R
R/simY_frn.R
R/rbeta_ab_fc.R
R/simY_rrl.R
R/simY_ord.R
R/rZ_bin_fc.R
R/simY_nrm.R
R/rmvnorm.R
R/rZ_cbin_fc.R
R/el2sm.R
R/rbeta_ab_rep_fc.R
R/netplot.R
R/sm2el.R
R/rs2_fc.R
R/ame_rep.R
R/rUV_sym_fc.R
R/gofstats.R
R/amen-package.R
R/addlines.R
R/rrho_mh.R
R/rUV_rep_fc.R
R/raSab_cbin_fc.R
R/rUV_fc.R
R/rs2_rep_fc.R
R/xnet.R
R/rwish.R
R/rZ_ord_fc.R
R/raSab_frn_fc.R
R/rrho_mh_rep.R
R/mhalf.R
R/zscores.R
R/ame.R
R/plot.ame.R
R/rZ_nrm_fc.R
R/raSab_bin_fc.R
R/design_array.R
vignettes
vignettes/amen.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/rZ_rrl_fc.Rd
man/simY_rrl.Rd
man/raSab_cbin_fc.Rd
man/addhealthc3.Rd
man/ame.Rd
man/rmvnorm.Rd
man/rUV_fc.Rd
man/lazegalaw.Rd
man/gofstats.Rd
man/design_array.Rd
man/YX_bin.Rd
man/raSab_bin_fc.Rd
man/YX_cbin.Rd
man/netplot.Rd
man/comtrade.Rd
man/mhalf.Rd
man/simY_nrm.Rd
man/sampsonmonks.Rd
man/simY_ord.Rd
man/YX_rrl.Rd
man/sheep.Rd
man/dutchcollege.Rd
man/IR90s.Rd
man/rUV_rep_fc.Rd
man/YX_bin_long.Rd
man/rrho_mh_rep.Rd
man/Xbeta.Rd
man/plot.ame.Rd
man/rs2_fc.Rd
man/zscores.Rd
man/YX_nrm.Rd
man/addhealthc9.Rd
man/rZ_frn_fc.Rd
man/raSab_frn_fc.Rd
man/rZ_nrm_fc.Rd
man/YX_ord.Rd
man/rbeta_ab_fc.Rd
man/rZ_cbin_fc.Rd
man/rZ_ord_fc.Rd
man/rs2_rep_fc.Rd
man/circplot.Rd
man/simY_frn.Rd
man/simY_bin.Rd
man/rZ_bin_fc.Rd
man/coldwar.Rd
man/YX_frn.Rd
man/addlines.Rd
man/sm2el.Rd
man/summary.ame.Rd
man/ame_rep.Rd
man/rUV_sym_fc.Rd
man/rrho_mh.Rd
man/amen-package.Rd
man/xnet.Rd
man/el2sm.Rd
man/simZ.Rd
man/rbeta_ab_rep_fc.Rd
man/rwish.Rd
amen documentation built on May 20, 2017, 12:02 a.m.

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