aml: Adaptive Mixed LASSO
Version 0.1-1

This package implements the adaptive mixed lasso (AML) method proposed by Wang et al.(2011). AML applies adaptive lasso penalty to a large number of predictors, thus producing a sparse model, while accounting for the population structure in the linear mixed model framework. The package here is primarily designed for application to genome wide association studies or genomic prediction in plant breeding populations, though it could be applied to other settings of linear mixed models.

AuthorDong Wang
Date of publication2013-11-28 08:14:36
MaintainerDong Wang <dwangstat@gmail.com>
LicenseGPL (>= 2)
Version0.1-1
URL http://www.r-project.org
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("aml")

Popular man pages

aml.estimate: Estimate Genetic Values Using AML Fit
aml.pred.outside: Prediction With Adaptive Mixed LASSO
amltest: Adaptive Mixed LASSO Analysis
cleanclust: Clean, Impute, and Filter Markers
epigen: Generate Epistatic Effect Matrix
wheat: Genetic and Phenotype Data of a Wheat Breeding Population
See all...

All man pages Function index File listing

Man pages

aml.estimate: Estimate Genetic Values Using AML Fit
aml.pred.outside: Prediction With Adaptive Mixed LASSO
amltest: Adaptive Mixed LASSO Analysis
cleanclust: Clean, Impute, and Filter Markers
epigen: Generate Epistatic Effect Matrix
wheat: Genetic and Phenotype Data of a Wheat Breeding Population

Functions

aml.estimate Man page Source code
aml.pred.outside Man page Source code
amltest Man page Source code
calseq Source code
cimput Source code
cleanclust Man page Source code
epigen Man page Source code
grlik2 Source code
lik2 Source code
nchoose2 Source code
sumna Source code
wheat Man page

Files

NAMESPACE
data
data/wheat.RData
R
R/aml.pred.outside.R
R/epigen.R
R/aml.estimate.R
R/au.function.R
R/amltest.R
R/cleanclust.R
MD5
DESCRIPTION
man
man/epigen.Rd
man/wheat.Rd
man/amltest.Rd
man/aml.pred.outside.Rd
man/cleanclust.Rd
man/aml.estimate.Rd
aml documentation built on May 19, 2017, 10:44 p.m.

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