anapuce: Tools for microarray data analysis
Version 2.2

This package contains functions for normalisation,differentially analysis of microarray data and others functions implementing recent methods developed by the Statistic and Genom Team from UMR 518 AgroParisTech/INRA Appl. Math. Comput. Sc.

AuthorJ. Aubert (INRA)
Date of publication2012-10-29 08:58:13
MaintainerJ. Aubert <julie.aubert@agroparistech.fr>
LicenseGPL-2
Version2.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("anapuce")

Getting started

Package overview

Popular man pages

anapuce-package: Tools for microarray data analysis
apo: Apo AI data
FileChoice: Function to choose the files to analyze
filterByDefault: Filter applied on data before normalisation
LBI: Label Bias Index
LocalFDR: Local FDR
mixgamma: Gamma mixture
See all...

All man pages Function index File listing

Man pages

anapuce-package: Tools for microarray data analysis
apo: Apo AI data
DiffAnalysis: Differential Analysis for paired data
DiffAnalysis.unpaired: Differential Analysis for unpaired data
est.varmixt: Variance Mixture Estimation
fdr.estimate.eta0: Estimate the Proportion of Null p-Values
FileChoice: Function to choose the files to analyze
filterByDefault: Filter applied on data before normalisation
fonctionMobile: fonctionMobile
Intensity.Norm: Function to compute normalized intensity for each channel
LBI: Label Bias Index
lissageMM: Mean Average Smoothing
LocalFDR: Local FDR
MeanBySpot: Mean By Spot
mixgamma: Gamma mixture
normalisation: Function to normalize microarray data
rowVars: Form row variances
spleen: Spleen Data set

Functions

DiffAnalysis Man page Source code
DiffAnalysis.unpaired Man page Source code
FileChoice Man page Source code
Intensity.Norm Man page Source code
LBI Man page Source code
LocalFDR Man page Source code
MeanBySpot Man page Source code
anapuce Man page
anapuce-package Man page
apo Man page
est.varmixt Man page Source code
fdr.estimate.eta0 Man page Source code
filterByDefault Man page Source code
fonctionMobile Man page Source code
lissageMM Man page Source code
mixgamma Man page Source code
normalisation Man page Source code
rowVars Man page Source code
spleen Man page

Files

data
data/datalist
data/spleen.RData
data/apo.RData
NAMESPACE
man
man/Intensity.Norm.Rd
man/est.varmixt.Rd
man/LBI.Rd
man/fdr.estimate.eta0.Rd
man/MeanBySpot.Rd
man/anapuce-package.Rd
man/FileChoice.Rd
man/rowVars.Rd
man/LocalFDR.Rd
man/apo.Rd
man/mixgamma.Rd
man/spleen.Rd
man/DiffAnalysis.unpaired.Rd
man/DiffAnalysis.Rd
man/filterByDefault.Rd
man/fonctionMobile.Rd
man/normalisation.Rd
man/lissageMM.Rd
DESCRIPTION
MD5
R
R/DiffAnalysis.unpaired.R
R/filterByDefault.R
R/normalisation.R
R/DiffAnalysis.R
R/mixgamma.R
R/FileChoice.R
R/fonctionMobile.R
R/LBI.R
R/rowVars.R
R/lissageMM.R
R/est.varmixt.R
R/Intensity.Norm.R
R/LocalFDR.R
R/fdr.estimate.eta0.R
R/MeanBySpot.R
anapuce documentation built on May 19, 2017, 9:04 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.