anapuce: Tools for microarray data analysis

This package contains functions for normalisation,differentially analysis of microarray data and others functions implementing recent methods developed by the Statistic and Genom Team from UMR 518 AgroParisTech/INRA Appl. Math. Comput. Sc.

Author
J. Aubert (INRA)
Date of publication
2012-10-29 08:58:13
Maintainer
J. Aubert <julie.aubert@agroparistech.fr>
License
GPL-2
Version
2.2

View on CRAN

Man pages

anapuce-package
Tools for microarray data analysis
apo
Apo AI data
DiffAnalysis
Differential Analysis for paired data
DiffAnalysis.unpaired
Differential Analysis for unpaired data
est.varmixt
Variance Mixture Estimation
fdr.estimate.eta0
Estimate the Proportion of Null p-Values
FileChoice
Function to choose the files to analyze
filterByDefault
Filter applied on data before normalisation
fonctionMobile
fonctionMobile
Intensity.Norm
Function to compute normalized intensity for each channel
LBI
Label Bias Index
lissageMM
Mean Average Smoothing
LocalFDR
Local FDR
MeanBySpot
Mean By Spot
mixgamma
Gamma mixture
normalisation
Function to normalize microarray data
rowVars
Form row variances
spleen
Spleen Data set

Files in this package

anapuce
anapuce/data
anapuce/data/datalist
anapuce/data/spleen.RData
anapuce/data/apo.RData
anapuce/NAMESPACE
anapuce/man
anapuce/man/Intensity.Norm.Rd
anapuce/man/est.varmixt.Rd
anapuce/man/LBI.Rd
anapuce/man/fdr.estimate.eta0.Rd
anapuce/man/MeanBySpot.Rd
anapuce/man/anapuce-package.Rd
anapuce/man/FileChoice.Rd
anapuce/man/rowVars.Rd
anapuce/man/LocalFDR.Rd
anapuce/man/apo.Rd
anapuce/man/mixgamma.Rd
anapuce/man/spleen.Rd
anapuce/man/DiffAnalysis.unpaired.Rd
anapuce/man/DiffAnalysis.Rd
anapuce/man/filterByDefault.Rd
anapuce/man/fonctionMobile.Rd
anapuce/man/normalisation.Rd
anapuce/man/lissageMM.Rd
anapuce/DESCRIPTION
anapuce/MD5
anapuce/R
anapuce/R/DiffAnalysis.unpaired.R
anapuce/R/filterByDefault.R
anapuce/R/normalisation.R
anapuce/R/DiffAnalysis.R
anapuce/R/mixgamma.R
anapuce/R/FileChoice.R
anapuce/R/fonctionMobile.R
anapuce/R/LBI.R
anapuce/R/rowVars.R
anapuce/R/lissageMM.R
anapuce/R/est.varmixt.R
anapuce/R/Intensity.Norm.R
anapuce/R/LocalFDR.R
anapuce/R/fdr.estimate.eta0.R
anapuce/R/MeanBySpot.R