subsampled_permuted_network_metrics: To generate subsamples of the permuted networks and obtain...

In aniSNA: Statistical Network Analysis of Animal Social Networks

To generate subsamples of the permuted networks and obtain network metrics of those subsamples

Description

To generate subsamples of the permuted networks and obtain network metrics of those subsamples

Usage

subsampled_permuted_network_metrics(
  networks_list,
  subsampling_proportion = c(0.1, 0.3, 0.5, 0.7, 0.9),
  network_metrics_functions_list = c(edge_density = function(x) igraph::edge_density(x),
    diameter = function(x) igraph::diameter(x, weights = NA), transitivity = function(x)
    igraph::transitivity(x))
)

Arguments

networks_list	A list of igraph objects obtained by permuting the observed network
subsampling_proportion	A vector depicting the levels (in proportion) at which subsamples to be taken
network_metrics_functions_list	A list consisting of function definitions of the network metrics that the user wants to evaluate. Each element in the list should have an assigned name. Default = c("edge_density" = function(x) igraph::edge_density(x), "diameter" = function(x) igraph::diameter(x, weights = NA), "transitivity" = function(x) igraph::transitivity(x))

Value

A list of network metrics of class "Subsampled_Permuted_Network_Metrics". Each element of list is a matrix whose columns correspond to subsampling_proportion and rows correspond to the number of networks in networks_list. The entries of the matrix provide values of the corresponding metric.

Examples

data(elk_2010_permutations)
elk_subsamples_permuted_networks <- subsampled_permuted_network_metrics(elk_2010_permutations)
plot(elk_subsamples_permuted_networks, elk_network_2010)

aniSNA documentation built on May 29, 2024, 11:14 a.m.