View source: R/inspect_apsimx_json.R
inspect_apsimx | R Documentation |
inspect a JSON apsimx file. It does not replace the GUI, but it can save time by quickly checking parameters and values.
inspect_apsimx( file = "", src.dir = ".", node = c("Clock", "Weather", "Soil", "SurfaceOrganicMatter", "MicroClimate", "Crop", "Manager", "Report", "Other"), soil.child = c("Metadata", "Water", "InitialWater", "Chemical", "Physical", "Analysis", "SoilWater", "InitialN", "CERESSoilTemperature", "Sample", "Nutrient", "Organic"), parm = NULL, digits = 3, print.path = FALSE, root )
file |
file ending in .apsimx to be inspected (JSON) |
src.dir |
directory containing the .apsimx file to be inspected; defaults to the current working directory |
node |
specific node to be inspected either ‘Clock’, ‘Weather’, ‘Soil’, ‘SurfaceOrganicMatter’, ‘MicroClimate’, ‘Crop’, ‘Manager’ or ‘Other’ |
soil.child |
specific soil component to be inspected. The options vary depending on what is available (see details) |
parm |
parameter to refine the inspection of the ‘manager’ list(‘parm’,‘position’), use ‘NA’ for all the positions. ‘parm’ can be a regular expression for partial matching. |
digits |
number of decimals to print (default 3). Not used now because everything is a character. |
print.path |
whether to print the path to the specific parameter. Useful to give the later editing. (Also returned as ‘invisible’) |
root |
root node label. In simulation structures such as factorials there will be multiple possible nodes. This can be specified by supplying an appropriate character. |
In general, this function is used to edit one parameter at a time. There are some exceptions.
- For the Clock, both the ‘Start’ and ‘End’ can be edited in one call.
This is simply a script that prints the relevant parameters which are likely to need editing. It does not print all information from an .apsimx file. To investigate the available ‘soil.childs’ specify ‘Soil’ for ‘node’ and do not specify the ‘soil.child’.
prints a table with inspected parameters and values (and ‘parm path’ when ‘print.path’ = TRUE).
extd.dir <- system.file("extdata", package = "apsimx") inspect_apsimx("Wheat.apsimx", src.dir = extd.dir, node = "Clock") inspect_apsimx("Wheat.apsimx", src.dir = extd.dir, node = "Weather") inspect_apsimx("Wheat.apsimx", src.dir = extd.dir, node = "Soil", soil.child = "Metadata") inspect_apsimx("Wheat.apsimx", src.dir = extd.dir, node = "Soil", soil.child = "Physical") inspect_apsimx("Wheat.apsimx", src.dir = extd.dir, node = "Soil", soil.child = "SoilWater") inspect_apsimx("Wheat.apsimx", src.dir = extd.dir, node = "Soil", soil.child = "Organic") inspect_apsimx("Wheat.apsimx", src.dir = extd.dir, node = "Soil", soil.child = "Chemical") inspect_apsimx("Wheat.apsimx", src.dir = extd.dir, node = "Soil", soil.child = "InitialWater") inspect_apsimx("Wheat.apsimx", src.dir = extd.dir, node = "Soil", soil.child = "InitialN") inspect_apsimx("Wheat.apsimx", src.dir = extd.dir, node = "SurfaceOrganicMatter") inspect_apsimx("Wheat.apsimx", src.dir = extd.dir, node = "MicroClimate") inspect_apsimx("Wheat.apsimx", src.dir = extd.dir, node = "Crop") inspect_apsimx("Wheat.apsimx", src.dir = extd.dir, node = "Manager") inspect_apsimx("Wheat.apsimx", src.dir = extd.dir, node = "Report") ## Manager folder present extd.dir <- system.file("extdata", package = "apsimx") inspect_apsimx("maize-manager-folder.apsimx", node = "Other", src.dir = extd.dir, parm = list("Manager", "Fertiliser", "Amount"))
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