archiDART: Plant Root System Architecture Analysis Using DART and RSML Files

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Analysis of complex plant root system architectures (RSA) using the output files created by Data Analysis of Root Tracings (DART), an open-access software dedicated to the study of plant root architecture and development across time series (Le Bot et al (2010) "DART: a software to analyse root system architecture and development from captured images", Plant and Soil, <DOI:10.1007/s11104-009-0005-2>), and RSA data encoded with the Root System Markup Language (RSML) (Lobet et al (2015) "Root System Markup Language: toward a unified root architecture description language", Plant Physiology, <DOI:10.1104/pp.114.253625>). More information can be found in Delory et al (2016) "archiDART: an R package for the automated computation of plant root architectural traits", Plant and Soil, <DOI:10.1007/s11104-015-2673-4>.

Author
Benjamin M Delory, Caroline Baudson, Yves Brostaux, Guillaume Lobet, Patrick du Jardin, Loic Pages, Pierre Delaplace
Date of publication
2016-03-08 00:11:44
Maintainer
Benjamin M Delory <Benjamin.Delory@leuphana.de>
License
GPL-2
Version
1.4

View on CRAN

Man pages

archidraw
X-Y Plotting of Vectorized Root Systems
archigrow
Computing Growth Rates and X-Y Plotting of Vectorized Root...
architect
Computing Traits Describing The Global Root System...
ch7lie
LIE Data for the Vectorized Root System of a Young Oak Tree
ch7rac
RAC Data for the Vectorized Root System of a Young Oak Tree
ch7tps
TPS Data for the Vectorized Root System of a Young Oak Tree
latdist
Computing Lateral Root Length and Density Distribution
trajectory
Computing Root Growth Directions and Trajectories

Files in this package

archiDART
archiDART/NAMESPACE
archiDART/data
archiDART/data/ch7rac.RData
archiDART/data/ch7lie.RData
archiDART/data/ch7tps.RData
archiDART/R
archiDART/R/archigrow.R
archiDART/R/xnodes.R
archiDART/R/trajectory.R
archiDART/R/ynodes.R
archiDART/R/latdist.R
archiDART/R/architect.R
archiDART/R/rsmlToDART.R
archiDART/R/archidraw.R
archiDART/MD5
archiDART/DESCRIPTION
archiDART/man
archiDART/man/ch7lie.Rd
archiDART/man/trajectory.Rd
archiDART/man/ch7tps.Rd
archiDART/man/archidraw.Rd
archiDART/man/latdist.Rd
archiDART/man/ch7rac.Rd
archiDART/man/archigrow.Rd
archiDART/man/architect.Rd