archiDART: Plant Root System Architecture Analysis Using DART and RSML Files
Version 2.0

Analysis of complex plant root system architectures (RSA) using the output files created by Data Analysis of Root Tracings (DART), an open-access software dedicated to the study of plant root architecture and development across time series (Le Bot et al (2010) "DART: a software to analyse root system architecture and development from captured images", Plant and Soil, ), and RSA data encoded with the Root System Markup Language (RSML) (Lobet et al (2015) "Root System Markup Language: toward a unified root architecture description language", Plant Physiology, ). More information can be found in Delory et al (2016) "archiDART: an R package for the automated computation of plant root architectural traits", Plant and Soil, .

AuthorBenjamin M Delory, Caroline Baudson, Yves Brostaux, Guillaume Lobet, Patrick du Jardin, Loic Pages, Pierre Delaplace
Date of publication2017-05-11 07:40:23 UTC
MaintainerBenjamin M Delory <Benjamin.Delory@leuphana.de>
LicenseGPL-2
Version2.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("archiDART")

Popular man pages

archidraw: Plotting Vectorized Root Systems
archigrow: Computing Growth Rates and Plotting of Vectorized Root...
architect: Computing Traits Describing The Global Root System...
latdist: Computing Lateral Root Length and Density Distribution
trajectory: Computing Root Growth Directions and Trajectories
See all...

All man pages Function index File listing

Man pages

archidraw: Plotting Vectorized Root Systems
archigrow: Computing Growth Rates and Plotting of Vectorized Root...
architect: Computing Traits Describing The Global Root System...
latdist: Computing Lateral Root Length and Density Distribution
trajectory: Computing Root Growth Directions and Trajectories

Functions

XYcoord2D Source code
XYcoord3D Source code
archidraw Man page Source code
archigrow Man page Source code
architect Man page Source code
distance2D Source code
distance3D Source code
latdist Man page Source code
normal Source code
rsmlToDART Source code
trajectory Man page Source code
xnodes Source code
ynodes Source code
znodes Source code

Files

inst
inst/CITATION
inst/extdata
inst/extdata/ch7.rac
inst/extdata/ch7.lie
inst/extdata/monocot-archisimple.rsml
inst/extdata/ch7.tps
inst/doc
inst/doc/archiDART.pdf
inst/doc/rsml.pdf
NAMESPACE
R
R/archigrow.R
R/trajectory.R
R/latdist.R
R/architect.R
R/rsmlToDART.R
R/archidraw.R
R/NotExport.R
MD5
DESCRIPTION
man
man/trajectory.Rd
man/archidraw.Rd
man/latdist.Rd
man/archigrow.Rd
man/architect.Rd
archiDART documentation built on May 19, 2017, 2:57 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.