Description Usage Format Details Examples
toys.data.multi is a simple simulated dataset of a multinomial classification problem.
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An object of class list
of length 2.
$Y: output variable: a factor with 3 levels "-1", "0", and "2";
$x A data-frame containing input variables: with 60 obs. of 50 variables.
The data-frame x is composed by 2 independant clusters, each cluster contains 25 correlated variables. It is an equiprobable three class problem, Y belongs to -1,0,1. There is only 6 true variables, that are in the first cluster, the others being noise. The simulation model is defined through the conditional distribution of the X^j for Y=y. In the first cluster, the X^j are simulated in the following way:
X^j ~ N(2*y,2) for j=1,2,3,4,5,6;
the other variables are noise, X^j ~ N(0,1) for j=7,. . . ,25.
The second cluster of 25 variables contains only noise variables.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 | library(ClustOfVar)
library(impute)
library(FAMT)
library(VSURF)
library(glmnet)
library(anapuce)
library(qvalue)
X<-toys.data.multi$x
Y<-toys.data.multi$Y
scoreX<-data.frame(c(rep(8,6),rep(0,44)))
rownames(scoreX)<-colnames(X)
select<-ARMADA.heatmap(X, Y, scoreX, threshold=1)
## Not run:
result<-ARMADA(X,Y, nclust=2)
select<-ARMADA.heatmap(X, Y, result[[3]], threshold=5)
## End(Not run)
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