extractRawCopyNumbers.CopyNumberChromosomalModel: Extracts relative copy numbers

In aroma.core: Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework

Extracts relative copy numbers

Description

Extracts relative copy numbers for a particular array and chromosome.

Usage

## S3 method for class 'CopyNumberChromosomalModel'
extractRawCopyNumbers(this, array, chromosome, ..., logBase=2, cache=FALSE, force=FALSE,
  verbose=FALSE)

Arguments

array	The index of the array to be extracted.
chromosome	The index of the chromosome to be extracted.
...	See subclasses.
logBase	(optional) The base of the logarithm used for the ratios. If NULL, the ratios are not logged.
cache	If TRUE, results are cached, otherwise not.
force	If TRUE, cached results are ignored.
verbose	See Verbose.

Value

See subclasses.

Parallel processing

Except for an in-object caching (cache=TRUE), this method access data solely in an read-only fashion. This method is safe to call with different arrays and/or chromosomes in parallel.

Author(s)

Henrik Bengtsson

See Also

For more information see CopyNumberChromosomalModel.

aroma.core documentation built on June 25, 2024, 1:15 a.m.